make[3]: Entering directory '/var/tmp/portage/sci-biology/mcl-14.137/work/mcl-14-137/src/shcl' x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -O2 -pipe -march=native -fno-common -pthread -c -o clmformat.o clmformat.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src -I../.. -O2 -pipe -march=native -fno-common -pthread -c -o report.o report.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -pthread -lm -Wl,-O1 -Wl,--as-needed -o clmformat clmformat.o report.o ../mcl/libmcl.a ../clew/libclew.a ../gryphon/libgryphon.a ../impala/libimpala.a ../../util/libutil.a -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: report.o:(.bss+0x0): multiple definition of `mclx_n_thread_g'; clmformat.o:(.bss+0x8): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: report.o:(.bss+0x8): multiple definition of `nu_magic'; clmformat.o:(.bss+0x10): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-libressl-20200125-183534 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.6 [3] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Sun, 26 Jan 2020 17:49:34 +0000 emerge -qpvO sci-biology/mcl [ebuild N ] sci-biology/mcl-14.137 USE="blast"
Created attachment 604802 [details] emerge-info.txt
Created attachment 604804 [details] emerge-history.txt
Created attachment 604806 [details] environment
Created attachment 604808 [details] etc.portage.tbz2
Created attachment 604810 [details] logs.tbz2
Created attachment 604812 [details] sci-biology:mcl-14.137:20200126-184121.log
Created attachment 604814 [details] temp.tbz2
*** Bug 721278 has been marked as a duplicate of this bug. ***
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4129eb414e8ac4027b2e7c4b9445aa8075fd8dea commit 4129eb414e8ac4027b2e7c4b9445aa8075fd8dea Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-06-21 13:49:32 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-06-21 13:49:32 +0000 sci-biology/mcl: Fix building against GCC 10 Closes: https://bugs.gentoo.org/706530 Package-Manager: Portage-2.3.101, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org> ...ons.patch => mcl-14.137-fix-declarations.patch} | 34 +++++++++++++++++++--- sci-biology/mcl/mcl-14.137.ebuild | 2 +- 2 files changed, 31 insertions(+), 5 deletions(-)
