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Bug 697126 - sys-cluster/torque-6.0.4 - configure: error: TORQUE needs lib crypto (often openssl-devel) in order to build
Summary: sys-cluster/torque-6.0.4 - configure: error: TORQUE needs lib crypto (often o...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Cluster Team
URL:
Whiteboard:
Keywords:
: 697128 (view as bug list)
Depends on:
Blocks:
 
Reported: 2019-10-10 10:41 UTC by Martin Mokrejš
Modified: 2020-03-05 18:55 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,12.73 KB, text/plain)
2019-10-10 10:42 UTC, Martin Mokrejš
Details
build.log (ppc, 4.1.7-r1) (torque-4.1.7-r1:20191102-093634.log,9.47 KB, text/plain)
2019-11-02 09:49 UTC, ernsteiswuerfel
Details

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Description Martin Mokrejš 2019-10-10 10:41:50 UTC
The below error does not happen with sys-cluster/torque-6.0.4-r1 but as I do not see this bug reported before ...:


checking for stat64... yes
checking for open64... yes
checking for lseek64... yes
./configure: line 13418: ac_fn_c_check_member: command not found
checking for struct stat64.st_mode... yes
checking if largefile compiles (looking at you, OSX)... checking for pthread_create in -lpthread... yes
checking for SSL_accept in -lssl... yes
checking for BN_init in -lcrypto... no
configure: error: TORQUE needs lib crypto (often openssl-devel) in order to build

!!! Please attach the following file when seeking support:
!!! /scratch/var/tmp/portage/sys-cluster/torque-6.0.4/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.log
 * ERROR: sys-cluster/torque-6.0.4::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  125:  Called src_configure
 *             environment, line 3447:  Called econf '--enable-gui' '--enable-tcl-qstat' '--enable-syslog' '--enable-server' '--disable-drmaa' '--disable-munge-auth' '--disable-nvidia-gpus' '--with-rcp=scp' '--disable-cpuset' '--disable-geometry-request' '--disable-cgroups' '--disable-autorun' '--disable-quickcommit' '--with-server-home=/var/spool/torque' '--with-environ=/etc/pbs_environment' '--with-default-server=' '--disable-gcc-warnings' '--disable-silent-rules' '--with-tcp-retry-limit=2' '--without-loadlibfile'
 *        phase-helpers.sh, line  681:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sys-cluster/torque-6.0.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-cluster/torque-6.0.4::gentoo'`.
 * The complete build log is located at '/scratch/var/tmp/portage/sys-cluster/torque-6.0.4/temp/build.log'.
 * The ebuild environment file is located at '/scratch/var/tmp/portage/sys-cluster/torque-6.0.4/temp/environment'.
 * Working directory: '/scratch/var/tmp/portage/sys-cluster/torque-6.0.4/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6'
 * S: '/scratch/var/tmp/portage/sys-cluster/torque-6.0.4/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6'



# emerge -pv torque

[ebuild  N     ] sys-cluster/torque-6.0.4::gentoo  USE="crypt server syslog tk -autorun -cgroups -cpusets -doc -drmaa -libressl -munge -nvidia -quickcommit" 0 KiB



# emerge --info
Portage 2.3.76 (python 2.7.16-final-0, default/linux/amd64/17.1/no-multilib, gcc-9.2.0, glibc-2.29-r5, 5.3.5 x86_64)
=================================================================
System uname: Linux-5.3.5-x86_64-Intel-R-_Core-TM-_i7-7820HQ_CPU_@_2.90GHz-with-gentoo-2.6
KiB Mem:    32814592 total,  24578144 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 10 Oct 2019 09:00:01 +0000
Head commit of repository gentoo: 1fdaf99b0ca08050b7424994449afee886b63a74
sh bash 5.0_p11
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          5.0_p11::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.0::gentoo
dev-lang/python:          2.7.16::gentoo, 3.5.7::gentoo, 3.6.9::gentoo, 3.7.4-r1::gentoo
dev-util/cmake:           3.15.4::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.13.4-r2::gentoo, 1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo
sys-devel/gcc:            9.2.0-r1::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r5::gentoo
Repositories:

gentoo
    location: /scratch/usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24

x-portage
    location: /scratch/usr/local/portage
    masters: gentoo
    priority: 0

x-layman
    location: /scratch/var/lib/layman
    masters: gentoo
    priority: 1

haskell
    location: /var/lib/layman/haskell
    masters: gentoo
    priority: 50

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

stefantalpalaru
    location: /var/lib/layman/stefantalpalaru
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 Nero-EULA-US AdobeFlash-10.3 AdobeFlash-11.x OPERA-2014 RAR Intel-SDP intel-ucode Skype-TOS vmware linux-firmware fasta vienna-rna unafold GRL MSttfEULA hplip-plugin meme mRNAmarkup ApE ICS ipw3945 finchtv modeller gmap master-pdf-editor abyss swiss-prot Aladdin AVASYS truecrypt-3.0 pyvcf Non-profit-OSL-3.0 estscan bcca_2010 oncotator Adobe blat staden CeCILL-1.1 phrap STRIDE cctbx-2.0 bh-luxi ARIADNE unRAR all-rights-reserved trf annovar_personal_only stampy-academic BSD-BroadInstitute UPennState freedist free-noncomm blasr sun-jlfgr FLI-Jena PSTT netperf sun-jsr67 xv vim.org OSGi-Specification-2.0 colt mod_fastcgi googleearth ACE AFL churchill genscan no-source-code linux-fw-redistributable"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf /usr/share/maven-bin-3.6/conf /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
CXXFLAGS="-O2 -pipe -march=native -ftree-vectorize"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=native -ftree-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news nostrip parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=native -ftree-vectorize"
GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LANG="cs_CZ.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en_US en_GB en cs"
MAKEOPTS="-j5"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/scratch/var/tmp"
USE="X acpi alsa amd64 amr apache apache2 asm avx avx2 berkdb bluetooth boost bzip2 cairo cgi cli coin consolekit cracklib crypt cryptlib cryptsetup cups cxx dbus device-mapper dhcp directfb drm dvd emboss encode fax fbcon ffmpeg flac fontconfig fortran gbm gcrypt gd gdbm geoip geolocation gimp glpk gmp gnutls gpm gps gtk hal hpijs hwdb iconv id3tag imaging innodb inotify java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack laptop lcms libnotify libtirpc lm_sensors mad mariadb matroska mmx modemmanager ncurses nfs nls nptl nptlonly nscd nss ntfsprogs objc ocr ogg opengl openmp openssl pam parport pbs pcre pcre16 pdf perl php png policykit polkit ppds pppd python qt3support qt4 qt5 readline rendering resolvconf romio scanner sctp seccomp server session slideshow sndfile split-usr sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 startup-notification suexec svg syslog tcl tcpd threads tiff tk truetype udev unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xattr xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="gpsclock navcom ntrip rtcm104v2 rtcm104v3 ublox nmea0183 nmea2000 passthrough" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en en-US en-GB cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" OPENMPI_RM="pbs" PHP_TARGETS="php5-4 php5-5" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_5 python3_6 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Martin Mokrejš 2019-10-10 10:42:11 UTC
Created attachment 592368 [details]
build.log
Comment 2 Jeroen Roovers (RETIRED) gentoo-dev 2019-10-10 11:04:14 UTC
*** Bug 697128 has been marked as a duplicate of this bug. ***
Comment 3 ernsteiswuerfel archtester 2019-11-02 09:49:21 UTC
Created attachment 594832 [details]
build.log (ppc, 4.1.7-r1)

Same for torque-4.1.7-r1 on ppc.
Comment 4 Ian Stakenvicius (RETIRED) gentoo-dev 2019-11-05 15:02:10 UTC
Torque-4 does have this issue and will continue to do so with USE=crypt

Torque-6.0.4-r1 however should have had this bug addressed.  Could you retry with that please?

I am in the process of verifying that version works as expected, in order to request for stabilization.  Note that wire-protocol is not compatible between torque-6 and torque-4 and so you will need to upgrade all systems in the cluster.
Comment 5 Ian Stakenvicius (RETIRED) gentoo-dev 2020-03-05 18:55:35 UTC
Fixed in sys-cluster/torque-6.0.4-r1