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Bug 691934 - sci-mathematics/petsc-3.11.3 : * econf failed: --with-x-dir=/usr did not work
Summary: sci-mathematics/petsc-3.11.3 : * econf failed: --with-x-dir=/usr did not work
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Matthias Maier
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-08-11 13:52 UTC by Toralf Förster
Modified: 2020-04-29 21:50 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.22 KB, text/plain)
2019-08-11 13:52 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,76.18 KB, text/plain)
2019-08-11 13:52 UTC, Toralf Förster
Details
environment (environment,106.88 KB, text/plain)
2019-08-11 13:52 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,10.58 KB, application/x-bzip)
2019-08-11 13:52 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,52.14 KB, application/x-bzip)
2019-08-11 13:52 UTC, Toralf Förster
Details
sci-mathematics:petsc-3.11.3:20190811-124941.log (sci-mathematics:petsc-3.11.3:20190811-124941.log,50.45 KB, text/plain)
2019-08-11 13:52 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,32.84 KB, application/x-bzip)
2019-08-11 13:52 UTC, Toralf Förster
Details
patch with configuration fixes from updated petsc-3.12.1 ebuild (petsc-3.11.3-configuration-fixes.patch,1.27 KB, patch)
2019-12-31 13:50 UTC, Kurt Zeiler
Details | Diff

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Description Toralf Förster gentoo-dev 2019-08-11 13:52:12 UTC
 * ERROR: sci-mathematics/petsc-3.11.3::gentoo failed (configure phase):
 *   econf failed
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome-libressl-20190809-192842

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
  [3]   jython2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems) *
Available Rust versions:
  (none found)
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.12.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpvO sci-mathematics/petsc
[ebuild  N    ] sci-mathematics/petsc-3.11.3  USE="X boost cxx fortran -afterimage -complex-scalars -debug -doc -fftw -hdf5 -hypre -metis -mpi -mumps -scotch -sparse -superlu -threads"
Comment 1 Toralf Förster gentoo-dev 2019-08-11 13:52:15 UTC
Created attachment 586538 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-08-11 13:52:18 UTC
Created attachment 586540 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2019-08-11 13:52:20 UTC
Created attachment 586542 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2019-08-11 13:52:23 UTC
Created attachment 586544 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2019-08-11 13:52:26 UTC
Created attachment 586546 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2019-08-11 13:52:28 UTC
Created attachment 586548 [details]
sci-mathematics:petsc-3.11.3:20190811-124941.log
Comment 7 Toralf Förster gentoo-dev 2019-08-11 13:52:31 UTC
Created attachment 586550 [details]
temp.tbz2
Comment 8 Peter Gustafson 2019-10-20 17:09:33 UTC
Just a confirmation this has hit my (mostly) stable amd64 system.
Comment 9 Kurt Zeiler 2019-12-31 13:50:59 UTC
Created attachment 602080 [details, diff]
patch with configuration fixes from updated petsc-3.12.1 ebuild

This patch includes configuration fixes from petsc-3.12.1.ebuild that change some "petsc_with" to "use_with" - notably these changes

-               $(petsc_with X x) \
-               $(petsc_with X x11) \
+               $(use_with X x) \
+               $(use_with X x11) \

would appear to fix this issue, or at least they did in my case. I can also upload the updated ebuild itself if that's more helpful.