New version realeased with significant improvements, see announcement at... https://www.rstudio.com/products/rstudio/release-notes/ I've not tried bumping locally as I don't use it (stuck with Emacs + ESS) but know that others find it useful but am aware that it has been difficult getting the ebuild working in the past
I have tried to make an ebuild for this version by copying the one for version 1.1.463. I first had to remove all patches, except the one related to systemd (1.0.44-systemd.patch). All the others do not apply anymore. Then I tried to compile it but it fails with an error about pandoc: CMake Error at src/cpp/session/CMakeLists.txt:29 (message): pandoc not found (re-run install-dependencies script to install) grep 'PANDOC_VERSION=' dependencies/common/install-pandoc seems to indicate that version 2.3.1 is needed, but is not available in portage. I tried to make an ebuild for pandoc for this version but it didn't work. I ended up with problems with pando-citeproc, texmath and tagsoup.
Thanks for having a go at this. I found #645082 which is for a version bump of Pandoc (originally for 2.1.1 but recently bumped to 2.7.1), but it appears to still have a few problems.
Now http://pandoc.org/releases.html shows app-text/pandoc-2.7.2 But: dev-haskell/pandoc-citeproc depends on pandoc whith this: RDEPEND=">=app-text/pandoc-1.16:=[profile?] <app-text/pandoc-2.1:=[profile?] For me it is like dependency hell, so I resort on haskell overlay which seems taking care of that.
I managed to install pandoc 2.3.1 from the haskell overlay. Then I updated the patch "rstudio-1.1.357-clang-pandoc.patch". It now fails with an error related to qt. I think this version needs qt 5.12 which is available in portage, but not yet stable.
Here is the error: -- Configuring done CMake Error at src/cpp/desktop/CMakeLists.txt:363 (add_executable): Cannot find source file: 3rdparty/qtsingleapplication/qtsingleapplication.cpp Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp .hxx .in .txx -- Generating done CMake Warning: Manually-specified variables were not used by the project: DISTRO_SHARE
Created attachment 574102 [details, diff] updated version of the pandoc patch
Created attachment 574104 [details] current version of my ebuild
Arrrght, just installed qt-5.12 Now I am hung in the middle, the Gentoorstudio-1.1.463 did not recompile, at 63% --- x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libQt5Network.so.5.12.3: warning: EVP_CipherFinal is often misused, please use EVP_CipherFinal_ex and EVP_CIPHER_CTX_cleanup make[2]: Leaving directory '/srv/portage/sci-mathematics/rstudio-1.1.463/work/rstudio-1.1.463_build' [ 63%] Built target rstudio make[1]: Leaving directory '/srv/portage/sci-mathematics/rstudio-1.1.463/work/rstudio-1.1.463_build' make: *** [Makefile:152: all] Error 2 --- @Francois Thanx for your work, I will try with that to rescue upgrade rstudio
(In reply to François Valenduc from comment #5) > -- Configuring done > CMake Error at src/cpp/desktop/CMakeLists.txt:363 (add_executable): > Cannot find source file: > > 3rdparty/qtsingleapplication/qtsingleapplication.cpp > > Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp > .hxx .in .txx @Francois I have the same error with your provided ebuild. I had a look and diffed to the previous version of the Gentoo ebuild: You did remove most the patches. Probably the didn't fit any more. BUT: There is a "sed" command in the src-prepare section, and in the Comment of it is stated: # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module. # It provides a library that has its version number appended to the end, # which is difficult to handle in cmake, as find_library does not support # searching for wildcard library names. So I find the library name from the # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt. THUS: The following "sed" command only functions and delivers the needed qtsingleapplication IF: the applicated patch rstudio-0.99.473-qtsingleapplication.patch makes some noise for sed to find. Without "sed" never applicates its medicine!
Also to be included in an updated ebuild are these DEPEND: dev-qt/qtpositioning dev-qt/qtwebengine[widgets] old:dev-qt/qtquickcontrols[widgets] or: dev-qt/qtquickcontrols2[widgets] <- I don't know or: dev-qt/qtwidget <- And -or- OR
Also there might be needed a new sed command to adjust the search for the Qt versions. Found this in src/cpp/desktop/CMakeLists.txt: set(QT_CANDIDATES 5.12.1 5.10.1)
Created attachment 575424 [details] rstudio-1.2.1335.ebuild thanks for all your comments rstudio-1.2.1335.ebuild compiles fine here
Created attachment 575426 [details, diff] rstudio-1.2.1335-qtsingleapplication.patch
@Thomas I am not so lucky: The installed newest boost-1.70 fails it boost::asio ...
@Ulenrich, did you try with boost 1.65? - want to provide some errorlog?
(In reply to Thomas Bettler from comment #15) > @Ulenrich, did you try with boost 1.65? - want to provide some errorlog? you may report your bug upstream: https://github.com/rstudio/rstudio/issues/4467 https://github.com/rstudio/rstudio/issues/4636
I get this at the end of the compilation: [java] Compiling module org.rstudio.studio.RStudio * ACCESS DENIED: open_wr: /root/.java/.userPrefs/.user.lock.root * ACCESS DENIED: open_wr: /root/.java/.userPrefs/.user.lock.root * ACCESS DENIED: open_wr: /root/.java/.userPrefs/.user.lock.root * ACCESS DENIED: open_wr: /root/.java/.userPrefs/.user.lock.root * ACCESS DENIED: open_wr: /root/.java/.userPrefs/.user.lock.root [java] Exception in thread "Timer-0" java.lang.SecurityException: Could not lock User prefs. Lock file access denied. [java] at java.util.prefs.FileSystemPreferences.checkLockFile0ErrorCode(FileSystemPreferences.java:937) [java] at java.util.prefs.FileSystemPreferences.lockFile(FileSystemPreferences.java:925) [java] at java.util.prefs.FileSystemPreferences.sync(FileSystemPreferences.java:729) [java] at java.util.prefs.FileSystemPreferences.flush(FileSystemPreferences.java:824) [java] at java.util.prefs.FileSystemPreferences.syncWorld(FileSystemPreferences.java:464) [java] at java.util.prefs.FileSystemPreferences.access$1200(FileSystemPreferences.java:50) [java] at java.util.prefs.FileSystemPreferences$3.run(FileSystemPreferences.java:432) [java] at java.util.TimerThread.mainLoop(Timer.java:555) [java] at java.util.TimerThread.run(Timer.java:505) It seems to compile correctly however.
For me it doesn't compile if I do not add addpredict /root/.java/.userPrefs in the ebuild. Furthermore, this ebuild installs files in /usr. There are now folders like www, symbolmaps, R in /usr. Can somebody explain this ?
Created attachment 579532 [details, diff] patch for java preferences The problem with java preferences problem can be solved with this patch.
Created attachment 579554 [details, diff] rstudio-1.2.1335-paths.patch (In reply to François Valenduc from comment #18) > Furthermore, this ebuild installs files in /usr. There are now folders like > www, symbolmaps, R in /usr. Try this updated patch
Created attachment 580338 [details, diff] patch for build with boost-1.70 Not tested beyond compiling
This has become more urgent now that boost-1.70 is officially unmasked in the tree and current rstudio is blocking it with "<dev-libs/boost-1.70:=". Somehow portage fails to just hold the update back and so boost and boost-build 1.70 need to be masked by hand...
(In reply to Bernd Feige from comment #22) > This has become more urgent now that boost-1.70 is officially unmasked in > the tree and current rstudio is blocking it with "<dev-libs/boost-1.70:=". As of my earlier tries: rstudio-1.2.1335 not is ready for boost-1.70 also
(In reply to Ulenrich from comment #23) > As of my earlier tries: > rstudio-1.2.1335 not is ready for boost-1.70 also same with the latest patch attached in this bug?
(In reply to Andreas Sturmlechner from comment #24) > (In reply to Ulenrich from comment #23) > > As of my earlier tries: > > rstudio-1.2.1335 not is ready for boost-1.70 also > same with the latest patch attached in this bug? I pulled all patches above now and compiled 1.2.1335. In fact it did not compile with boost-1.65.0 (missed a library call at ~65%) but compiled without problems against boost-1.70.0 and also works nicely so far. The dependency upon pandoc-2 had to be lifted, because that is not in the tree (need the Haskell overlay for that). RStudio didn't complain but it could be that some conversion functionality will be missing.
Thanks for the help. My 10 year old machine is very slow, I created the patches for this back on mar 30 and apr 9 then I got distracted trying to build a faster machine. Its seems to be compiling, I need to figure out the GLEP 81 user stuff.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cdda9adf72b626d020a063419c1f376755d1b456 commit cdda9adf72b626d020a063419c1f376755d1b456 Author: Mark Wright <gienah@gentoo.org> AuthorDate: 2019-08-21 14:03:46 +0000 Commit: Mark Wright <gienah@gentoo.org> CommitDate: 2019-08-21 14:03:46 +0000 sci-mathematics/rstudio: Bump to 1.2.1335, fix compile with >=boost 1.70.0 Bump, thanks to Neil, Ulenrich, François Valenduc, Thomas Bettler, Simon Maurer, Bernd Feige and asturm for helping. Split the rstudio-1.1.463-boost-1.69.0_p?.patch patches into 3 patch files. Closes: https://bugs.gentoo.org/683050 Closes: https://bugs.gentoo.org/686186 Package-Manager: Portage-2.3.71, Repoman-2.3.17 Signed-off-by: Mark Wright <gienah@gentoo.org> sci-mathematics/rstudio/Manifest | 3 + .../files/rstudio-1.1.463-boost-1.69.0_p1.patch | 222 +----------- .../files/rstudio-1.1.463-boost-1.69.0_p2.patch | 377 ++++++++++++--------- .../files/rstudio-1.1.463-boost-1.69.0_p3.patch | 167 +++++++++ .../files/rstudio-1.1.463-boost-1.70.0.patch | 46 +++ .../files/rstudio-1.2.1335-boost-1.70.0_p1.patch | 46 +++ .../files/rstudio-1.2.1335-boost-1.70.0_p2.patch | 17 + .../rstudio/files/rstudio-1.2.1335-core.patch | 160 +++++++++ .../rstudio-1.2.1335-fix-ptr-int-compare.patch | 13 + .../files/rstudio-1.2.1335-linker_flags.patch | 11 + .../rstudio/files/rstudio-1.2.1335-pandoc.patch | 32 ++ .../rstudio/files/rstudio-1.2.1335-paths.patch | 118 +++++++ .../rstudio/files/rstudio-1.2.1335-prefs.patch | 53 +++ .../rstudio-1.2.1335-qtsingleapplication.patch | 60 ++++ sci-mathematics/rstudio/rstudio-1.1.463-r1.ebuild | 255 ++++++++++++++ sci-mathematics/rstudio/rstudio-1.1.463.ebuild | 1 + sci-mathematics/rstudio/rstudio-1.2.1335.ebuild | 253 ++++++++++++++ 17 files changed, 1451 insertions(+), 383 deletions(-)
