Hi, when bootstrapping Gentoo::RAP instance with ./bootstrap-rap.sh I hit the following: * zlib-1.2.11.tar.gz BLAKE2B SHA512 size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking zlib-1.2.11.tar.gz to /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work >>> Source unpacked in /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work >>> Preparing source in /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11 ... * Applying zlib-1.2.11-fix-deflateParams-usage.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11 ... * abi_x86_64.amd64: running multilib-minimal_abi_src_configure /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/environment: line 2526: /apps/gentoo/usr/share/gnuconfig/config.sub: No such file or directory /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/configure --shared --prefix=/apps/gentoo/usr --libdir=/apps/gentoo/usr/lib64 Using x86_64-pc-linux-gnu-ar Using x86_64-pc-linux-gnu-ranlib Using x86_64-pc-linux-gnu-nm Checking for x86_64-pc-linux-gnu-gcc... Checking for shared library support... Building shared library libz.so.1.2.11 with x86_64-pc-linux-gnu-gcc. Checking for size_t... Yes. Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. Checking for unistd.h... Yes. Checking for stdarg.h... Yes. Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. >>> Source configured. >>> Compiling source in /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11 ... * abi_x86_64.amd64: running multilib-minimal_abi_src_compile make SHELL=/apps/gentoo/tmp/bin/bash -j104 x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/ -c -o example.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/test/example.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o adler32.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/adler32.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o crc32.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/crc32.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o deflate.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/deflate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o infback.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/infback.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o inffast.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inffast.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o inflate.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inflate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o inftrees.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inftrees.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o trees.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/trees.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o zutil.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/zutil.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o compress.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/compress.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o uncompr.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/uncompr.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o gzclose.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzclose.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o gzlib.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzlib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o gzread.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzread.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o gzwrite.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzwrite.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/ -c -o minigzip.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/test/minigzip.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/ -D_FILE_OFFSET_BITS=64 -c -o example64.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/test/example.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/ -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/test/minigzip.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/adler32.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/adler32.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/crc32.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/crc32.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/deflate.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/deflate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/infback.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/infback.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/inflate.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inflate.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/inffast.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inffast.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/inftrees.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/inftrees.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/trees.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/trees.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/zutil.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/zutil.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/compress.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/compress.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/uncompr.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/uncompr.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/gzclose.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzclose.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/gzlib.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzlib.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/gzread.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzread.c x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -DPIC -c -o objs/gzwrite.o /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/gzwrite.c x86_64-pc-linux-gnu-ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a x86_64-pc-linux-gnu-gcc -shared -Wl,-soname,libz.so.1,--version-script,/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11/zlib.map -O2 -pipe -O2 -pipe -fPIC -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o libz.so.1.2.11 adler32.lo crc32.lo deflate.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo zutil.lo compress.lo uncompr.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo -lc -L/apps/gentoo/usr/lib64 -Wl,--dynamic-linker=/apps/gentoo/lib64/ld-linux-x86-64.so.2 rm -f libz.so libz.so.1 ln -s libz.so.1.2.11 libz.so ln -s libz.so.1.2.11 libz.so.1 x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o examplesh example.o -L. libz.so.1.2.11 x86_64-pc-linux-gnu-gcc -O2 -pipe -O2 -pipe -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L. libz.so.1.2.11 libz.so.1.2.11: undefined reference to `memcpy@GLIBC_2.14' collect2: error: ld returned 1 exit status make: *** [examplesh] Error 1 make: *** Waiting for unfinished jobs.... libz.so.1.2.11: undefined reference to `memcpy@GLIBC_2.14' collect2: error: ld returned 1 exit status make: *** [minigzipsh] Error 1 * ERROR: sys-libs/zlib-1.2.11-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sys-libs/zlib-1.2.11-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sys-libs/zlib-1.2.11-r1::gentoo'`. * The complete build log is located at '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/build.log'. * The ebuild environment file is located at '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/environment'. * Working directory: '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11-abi_x86_64.amd64' * S: '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11' >>> Failed to emerge sys-libs/zlib-1.2.11-r1, Log file: >>> '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/build.log' * Messages for package sys-libs/zlib-1.2.11-r1: * ERROR: sys-libs/zlib-1.2.11-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sys-libs/zlib-1.2.11-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sys-libs/zlib-1.2.11-r1::gentoo'`. * The complete build log is located at '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/build.log'. * The ebuild environment file is located at '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/environment'. * Working directory: '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11-abi_x86_64.amd64' * S: '/apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/work/zlib-1.2.11' Hmmmm, I was already afraid of this to happen. Running /apps/gentoo/bin/bash ./bootstrap-rap.sh "/apps/gentoo" stage3 somewhere failed :( Details might be found in the build log: /apps/gentoo/var/tmp/portage/sys-libs/zlib-1.2.11-r1/temp/build.log I have no clue, really. Please find friendly folks in #gentoo-prefix on irc.gentoo.org, gentoo-alt@lists.gentoo.org mailing list, or file a bug at bugs.gentoo.org under Gentoo/Alt, Prefix Support. This is most inconvenient, and it crushed my ego. Sorry, I give up. Should you want to give it a try, there is /apps/gentoo/stage3.log
Created attachment 523270 [details] build.log
Created attachment 523272 [details] stage1.log.bz2
Created attachment 523274 [details] stage2.log.bz2
Created attachment 523276 [details] stage3.log.bz2
$ ./bootstrap-rap.sh /apps/gentoo stage3 * Bootstrapping Gentoo prefixed portage installation using * host: x86_64-pc-linux-gnu * prefix: /apps/gentoo * ready to bootstrap stage3 !!! emerge not found, did you bootstrap stage1? $ less /apps/gentoo/stage1.log $ find /apps/gentoo/ -name emerge /apps/gentoo/usr/portage/app-xemacs/emerge /apps/gentoo/tmp/usr/bin/emerge /apps/gentoo/tmp/usr/lib/portage/bin/emerge /apps/gentoo/tmp/usr/lib/portage/pym/portage/tests/emerge $ Can I re-start stage3 somehow? My EPREFIX is /apps/gentoo.
Created attachment 523286 [details] build.log build.log from an existing Gentoo::RAP installation with: $ emerge -pv zlib [ebuild R ] sys-libs/zlib-1.2.11-r1:0/1::gentoo USE="minizip static-libs" 0 KiB
What is the host system here? Is there a chroot involved?
The parent OS is amd64 with glibc-2.14: $ uname -a Linux uv1 2.6.32-696.20.1.el6.x86_64 #1 SMP Fri Jan 12 15:07:59 EST 2018 x86_64 Intel(R) Xeon(R) CPU E5-4627 v2 @ 3.30GHz GenuineIntel GNU/Linux $ cat /etc/redhat-release Red Hat Enterprise Linux Server release 6.9 (Santiago) $ No, I did not use chroot in any way.
right redhat or derivative sounds like linker/compiler mismatch
Can you use bootstrap-prefix.sh to see if this still reproduces?
