^ x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe -fPIC -fopenmp -march=native -O2 -pipe -fPIC -fopenmp -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/splay.c -o obj/splay.o src/splay.c:25:17: fatal error: omp.h: No such file or directory compilation terminated. make: *** [Makefile:110: obj/splay.o] Error 1 * ERROR: sci-biology/velvet-1.2.10::gentoo failed (compile phase): $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-desktop-unstable_20160811-160513) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- USE flags defined in ... ... make.conf: USE=" pax_kernel xtpax -cdinstall -oci8 -bindist pax_kernel xtpax -cdinstall -oci8 -bindist aes-ni bugzilla cairo cdda cgoups custom-optimization dec_av2 designer dot evdev gles gnuplot gtkstyle gzip havege icu imap introspection jadetex lapack latex lzma mbox mod mpeg mssql multimedia multitarget mysql obj ogg pdo plasma rendering scripts sdl sourceview sqlite3 sslv2 system-libvpx usb xml captcha compressed-lumas dii extras gd -gif gnome -graphicsmagick graphtft gtk image-converter imagemagick input_testpicture jpeg latex ljr mapimg -minimal pdf png test videoslideshow wxwidgets fontconfig extra xetex qt5 sqlite pcre16 webkit printsupport widgets graph -qpm gpg -qt4 qt3support gnome-keyring minizip -dynamic -openmp python gles2 mod mikmod modplug xcb egl eglfs tk openexr plotutils !imlib utils ffmpeg fpm" ... /etc/portage/package.use/*: mail-mta/ssmtp ssl net-misc/wget ssl app-editors/emacs -dbus -svg -ssl -gtk -gtk3 dev-util/cmake -qt4 -qt5 net-misc/iputils -caps -filecaps >=dev-libs/boehm-gc-7.4.2 threads app-text/poppler -qt5 unmasked packages in /etc/portage/package.unmask/*: ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-5.4.0 * Available Java Virtual Machines: [1] icedtea-bin-7 system-vm [2] icedtea-bin-8 Available Python interpreters, in order of preference: [1] python3.4 [2] python2.7 (fallback) [3] jython2.7 (fallback) Available Ruby profiles: [1] ruby20 (with Rubygems) * [2] ruby21 (with Rubygems) ----------------------------------------------------------------- Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop, gcc-5.4.0, glibc-2.23-r2, 4.7.0-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.7.0-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16156084 total, 2413152 free KiB Swap: 16777212 total, 16761192 free Timestamp of repository gentoo: Mon, 15 Aug 2016 00:04:31 +0000 sh bash 4.3_p46 ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1 app-shells/bash: 4.3_p46::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo dev-util/cmake: 3.6.1::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.2-r1::gentoo sys-apps/openrc: 0.21.3::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.26.1::gentoo sys-devel/gcc: 4.9.3::gentoo, 5.4.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /etc/stunnel/stunnel.conf /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb /var/lib/i2pd/certificates" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="!imlib X a52 aac acl acpi aes-ni alsa amd64 berkdb bluetooth branding bugzilla bzip2 cairo captcha cdda cdr cgoups cli compressed-lumas consolekit cracklib crypt cups custom-optimization cxx dbus dec_av2 designer dii dot dri dts dvd dvdr egl eglfs emboss encode evdev exif extra extras fam ffmpeg firefox flac fontconfig fortran fpm gd gdbm glamor gles gles2 gnome gnome-keyring gnuplot gpg gpm graph graphtft gtk gtkstyle gzip havege iconv icu image-converter imagemagick imap input_testpicture introspection ipv6 jadetex jpeg lapack latex lcms ldap libnotify ljr lzma mad mapimg mbox mikmod minizip mmx mmxext mng mod modplug modules mp3 mp4 mpeg mssql multilib multimedia multitarget mysql ncurses nls nptl obj ogg openexr opengl pam pango pax_kernel pcre pcre16 pdf pdo plasma plotutils png policykit ppds printsupport python qt3support qt5 readline rendering scripts sdl seccomp session sourceview spell sqlite sqlite3 sse sse2 ssl sslv2 startup-notification svg system-libvpx tcpd test tiff tk truetype udev udisks unicode upower usb utils videoslideshow vorbis webkit widgets wxwidgets x264 xattr xcb xetex xml xtpax xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 443344 [details] emerge-history.txt
Created attachment 443346 [details] environment
Created attachment 443348 [details] sci-biology:velvet-1.2.10:20160815-014831.log
Bug is fixed in https://github.com/gentoo/gentoo/pull/4421 Caused by USE=-openmp in global USE
