Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 566364 - sci-biology/repeatmasker-4.0.1: RepeatMaskerConfig.pm: No such file or directory
Summary: sci-biology/repeatmasker-4.0.1: RepeatMaskerConfig.pm: No such file or directory
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-11-20 22:01 UTC by Martin Mokrejš
Modified: 2018-11-30 17:55 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (build.log,3.16 KB, text/x-log)
2015-11-20 22:01 UTC, Martin Mokrejš 		Details
emerge --info (emerge_info.txt,6.34 KB, text/plain)
2015-11-21 08:08 UTC, Martin Mokrejš 		Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Martin Mokrejš 2015-11-20 22:01:45 UTC 
Created attachment 417484 [details]
build.log

sed: can't read /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker/RepeatMaskerConfig.pm: No such file or directory
 * ERROR: sci-biology/repeatmasker-4.0.1::gentoo failed (configure phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  93:  Called src_configure
 *   environment, line 225:  Called die
 * The specific snippet of code:
 *       sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
 *
Comment 1 Tomáš Mózes 2015-11-21 06:22:59 UTC 
Please attach your emerge --info.
Comment 2 Martin Mokrejš 2015-11-21 08:08:32 UTC 
Created attachment 417490 [details]
emerge --info