Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 564548 - [science overlay] sci-libs/gsl-1.16-r2 - Error: Action update unknown, eselect cblas update returned, Error: File "//etc/env.d/cblas/lib64/gsl" is missing!
Summary: [science overlay] sci-libs/gsl-1.16-r2 - Error: Action update unknown, eselec...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-10-31 09:31 UTC by Dennis Schridde
Modified: 2019-08-19 07:54 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,519.86 KB, text/plain)
2015-10-31 09:35 UTC, Dennis Schridde
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Dennis Schridde 2015-10-31 09:31:14 UTC
>>> Completed installing gsl-1.16-r2 into /var/tmp/portage/sci-libs/gsl-1.16-r2/image/

strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line -R .note.gnu.gold-version
   usr/lib64/libgslcblas.so.0.0.0
   usr/bin/gsl-randist
   usr/bin/gsl-histogram
   usr/lib64/libgsl.so.0.17.0
ecompressdir: xz  /usr/share/man
ecompressdir: xz  /usr/share/info
!!! Error: Action update unknown
exiting
 * eselect cblas update  returned 
!!! Error: File "//etc/env.d/cblas/lib64/gsl" is missing!
Call stack:
    * iface_do_show (skel.bash:143)
    * do_show (skel.bash:283)
    * check_do (core.bash:24)
    * do_action (core.bash:105)
    * main (eselect:309)
exiting
 * Creating Alternative for cblas
!!! Error: Action update unknown
exiting

Reproducible: Always




# emerge --info blas-reference cblas-reference lapack-reference gsl eselect-blas eselect-cblas virtual/blas virtual/cblas
Portage 2.2.23 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/plasma/systemd, gcc-4.9.3, glibc-2.22-r1, 4.2.5-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.2.5-gentoo-x86_64-AMD_A10-7800_Radeon_R7,_12_Compute_Cores_4C+8G-with-gentoo-2.2
KiB Mem:    15381424 total,   7580048 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 31 Oct 2015 08:15:01 +0000
sh bash 4.3_p42
ld GNU ld (Gentoo 2.25 p1.2) 2.25
ccache version 3.2.4 [disabled]
app-shells/bash:          4.3_p42::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.0::gentoo
dev-lang/python:          2.7.10::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/ccache:          3.2.4::gentoo
dev-util/cmake:           3.3.2-r1::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/sandbox:         2.9::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.2::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r1::gentoo
Repositories:

gentoo
    location: /var/cache/portage/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage
    priority: -1000

aegypius
    location: /var/lib/layman/aegypius
    sync-type: laymansync
    sync-uri: git://github.com/aegypius/overlay.git
    masters: gentoo
    priority: 50

kde
    location: /var/lib/layman/kde
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/proj/kde.git
    masters: gentoo
    priority: 50

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    sync-type: laymansync
    sync-uri: git://github.com/cschwan/sage-on-gentoo.git
    masters: gentoo science
    priority: 50

science
    location: /var/lib/layman/science
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/proj/sci.git
    masters: gentoo
    priority: 50

local
    location: /var/cache/portage/local
    masters: gentoo
    priority: 100

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -march=bdver3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-pipe -O2 -march=bdver3"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --nospinner"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildsyspkg compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j5"
PKGDIR="/var/cache/portage/packages"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aacplus aacs acl acpi alsa amd64 appindicator audit avahi bash-completion bdplus berkdb bluetooth bluray branding bzip2 cairo caps cdda cddb cdio cdr celt cjk cli conntrack cracklib crypt cups cxx dbus declarative dirac dri dts dvb dvd dvdr egl emboss encode exif fam fax ffmpeg firefox flac fontconfig fortran gdbm gif glamor gles gles2 gmp gpm gstreamer gtk ibus iconv ipv6 jpeg jpeg2k kde kipi ladspa latex lcms ldap libinput libnotify libproxy libsecret lua_target_lua5-2 lv2 lz4 lzma lzo mad mmx mmxext mng modemmanager modplug modules mp3 mp4 mpeg mplayer mtp multilib multitarget mysql ncurses netlink networkmanager nls nptl ogg openal opencl openexr opengl openmax openmp opus pam pango pch pcre pdf phonon plasma png policykit ppds pulseaudio qml qt3support qt4 qt5 readline rtmp samba scanner schroedinger sctp sdl seccomp semantic-desktop session speex spell sse sse2 ssl startup-notification subversion svg systemd tcpd theora threads tiff truetype udev udisks unicode upnp upnp-av upower usb v4l vaapi vdpau vorbis vpx wavpack wayland webp widgets x264 x265 xattr xcb xcomposite xinerama xml xrandr xscreensaver xv xvid xz zeroconf zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="stage words flow sheets gemini" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext sse sse2 sse3" DRACUT_MODULES="btrfs caps systemd" ELIBC="glibc" ENLIGHTENMENT_MODULES="*" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="coreboot efi-64 pc" INPUT_DEVICES="evdev joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en en_GB ar fa" LIRC_DEVICES="devinput" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

sci-libs/blas-reference-20131116-r1::science was built with the following:
USE="-int64 -static-libs -test" ABI_X86="64 -32 -x32"


sci-libs/lapack-reference-3.2.1-r1::gentoo was built with the following:
USE="(policykit) -doc" ABI_X86="64"


sci-libs/gsl-1.16-r2::science was built with the following:
USE="-cblas-external -static-libs" ABI_X86="64 -32 -x32"


app-eselect/eselect-blas-0.1::gentoo was built with the following:
USE="(policykit)" ABI_X86="64"


app-eselect/eselect-cblas-0.1::gentoo was built with the following:
USE="(policykit)" ABI_X86="64"


virtual/blas-2.1-r3::science was built with the following:
USE="-doc -int64" ABI_X86="64"
CHOST=""


virtual/cblas-2.0-r3::science was built with the following:
USE="-int64" ABI_X86="64 -32 -x32"
CHOST=""
Comment 1 Dennis Schridde 2015-10-31 09:33:25 UTC
See-Also: bug #546858, bug #563292, bug #563674, bug #563288, bug #564546, bug #564548
Comment 2 Dennis Schridde 2015-10-31 09:35:47 UTC
Created attachment 415790 [details]
build.log
Comment 3 Dennis Schridde 2015-10-31 09:47:16 UTC
$ eix -e eselect
[I] app-admin/eselect
     Available versions:  1.3.8 1.4.4 (~)1.4.5 (~)1.4.5-r101[1] **9999 **9999[1] {doc emacs vim-syntax}
     Installed versions:  1.4.5-r101[1](01:35:16 17/10/15)(-doc -emacs -vim-syntax)
     Homepage:            http://wiki.gentoo.org/wiki/Project:Eselect
     Description:         Gentoo's multi-purpose configuration and management tool

[1] "science" /var/lib/layman/science
Comment 4 Benda Xu gentoo-dev 2019-08-19 07:54:49 UTC
Hi, thank you for the bug report. The bug has recently been revolved by introduction of the new blas switching framework.

  https://wiki.gentoo.org/wiki/Blas-lapack-switch

Please give it a try.