Created attachment 407398 [details] emerge log * Package: sci-chemistry/ccp4i-6.1.3-r4 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking ccp4-6.1.3-core-src.tar.gz to /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work >>> Unpacking ccp4i-6.1.3-arpwarp.patch.bz2 to /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work >>> Unpacking 6.1.3-oasis4.0.patch.bz2 to /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work >>> Preparing source in /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work/ccp4-6.1.3 ... * Applying 6.1.3-fix-baubles.patch ... [ ok ] * Applying ccp4i-6.1.3-arpwarp.patch ... [ ok ] * Applying 6.1.3-oasis4.0.patch ... [ ok ] * QA warning: python_fix_shebang, ccp4i/ did not match any fixable files. * There are no Python files in specified directory. * Fixing shebang in share/dbccp4i/devel/http_dbclient.py. >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work/ccp4-6.1.3 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work/ccp4-6.1.3 ... >>> Source compiled. >>> Test phase [not enabled]: sci-chemistry/ccp4i-6.1.3-r4 >>> Install ccp4i-6.1.3-r4 into /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/image/ category sci-chemistry doexe: warning, skipping directory /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work/ccp4-6.1.3/ccp4i/bin/UNIX >>> Completed installing ccp4i-6.1.3-r4 into /var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/image/ Application initialization failed: no display name and no $DISPLAY environment variable Error in startup script: can't read "tk_version": no such variable while executing "catch "set system(TK_VERSION) $tk_version"" invoked from within "if { [catch "set system(TK_VERSION) $tk_version"] } { puts "CCP4Interface error initialising Tcl/TK perhaps because DISPLAY variable is not set a..." (file "/usr/lib64/ccp4/ccp4i/bin/ccp4i.tcl" line 27) invoked from within "source [file join $env(CCP4I_TOP) bin ccp4i.tcl]" (file "/usr/lib64/ccp4/ccp4i/bin/ccp4i" line 5) * ERROR: sci-chemistry/ccp4i-6.1.3-r4::gentoo failed (postinst phase): * virtualmake: the _ccp4-setup failed. * * Call stack: * ebuild.sh, line 93: Called pkg_postinst * environment, line 2018: Called virtualmake * environment, line 3580: Called die * The specific snippet of code: * [[ ${retval} -ne 0 ]] && die "${FUNCNAME}: the ${VIRTUALX_COMMAND} failed."; * * If you need support, post the output of `emerge --info '=sci-chemistry/ccp4i-6.1.3-r4::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/ccp4i-6.1.3-r4::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:ccp4i-6.1.3-r4:20150722-062222.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/temp/environment'. * Working directory: '/usr/lib64/python2.7/site-packages' * S: '/var/tmp/portage/sci-chemistry/ccp4i-6.1.3-r4/work/ccp4-6.1.3' * FAILED postinst: 1 ----------------------------------------------------------------- This is an stable amd64 chroot image (named amd64-gnome-stable_20150718-121352) at a hardened host acting as a tinderbox. Portage 2.2.20 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-4.8.4, glibc-2.20-r2, 4.0.8-hardened x86_64) ================================================================= System uname: Linux-4.0.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164692 total, 1541032 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Wed, 22 Jul 2015 01:45:01 +0000 sh bash 4.3_p33-r2 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.3_p33-r2::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.9-r1::gentoo, 3.3.5-r1::gentoo dev-util/cmake: 3.2.2::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.24-r3::gentoo sys-devel/gcc: 4.8.4::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: local location: /usr/local/portage masters: gentoo gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS=" --accept-properties=-interactive --accept-restrict=-fetch --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi aes-ni alsa amd64 apache2 avx avx2 berkdb bluetooth branding btrfs cairo cdda cdr cgi cli colord consolekit corefonts cracklib crypt cups cxx dbus designer dnssec dot dri drmkms dts dvd dvdr ecc eds emboss encode evo exif extraengine fam firefox flac fontconfig fortran fpm gdbm gif glamor gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk3 gudev gui iconv icu introspection ipv6 jadetex jpeg lapack lcms libkms libnotify libsecret libvirtd logrotate mad mbox minizip mmx mmxext mng modules mp3 mp4 mpeg multilib mysql nautilus ncurses nls nptl ogg opengl openmp openssl pam pango pax_kernel pcre pcre16 pdf plasma png policykit postgres ppds pulseaudio python qml qt3support qt4 readline sdl session sockets spell spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification svg tcpd tiff tracker truetype udev udisks uml unicode upower usb usbredir v4l video vorbis wxwidgets x264 xcb xkb xml xmp xslt xv xvfb xvid xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oc eanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
commit 7d62034735e700ca67e977470d79f5571b15b221 Author: Justin Lecher <jlec@gentoo.org> Date: Mon Oct 26 08:29:56 2015 +0100 Drop "CCP4: Software for Macromolecular Crystallography" obsoletes: Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780 Signed-off-by: Justin Lecher <jlec@gentoo.org> https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7d62034735e700ca67e977470d79f5571b15b221
