Created attachment 399734 [details] emerge log s -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/util/Str.c -fPIC -DPIC -o src/util/.libs/Str.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/util/Vector.lo src/util/Vector.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/util/Vector.c -fPIC -DPIC -o src/util/.libs/Vector.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/util/StringBuffer.lo src/util/StringBuffer.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/util/StringBuffer.c -fPIC -DPIC -o src/util/.libs/StringBuffer.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/system/Mem.lo src/system/Mem.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/system/Mem.c -fPIC -DPIC -o src/system/.libs/Mem.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/system/System.lo src/system/System.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/system/System.c -fPIC -DPIC -o src/system/.libs/System.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/system/Time.lo src/system/Time.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/system/Time.c -fPIC -DPIC -o src/system/.libs/Time.o /bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c -o src/db/ConnectionPool.lo src/db/ConnectionPool.c libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr/include/mysql -I/usr/include/mysql -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -I/usr/include/mysql -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/db/ConnectionPool.c -fPIC -DPIC -o src/db/.libs/ConnectionPool.o src/db/ConnectionPool.c: In function 'doSweep': src/db/ConnectionPool.c:136:16: error: variable 'wait' has initializer but incomplete type struct timespec wait = {0, 0}; ^ src/db/ConnectionPool.c:136:16: warning: excess elements in struct initializer [enabled by default] src/db/ConnectionPool.c:136:16: warning: (near initialization for 'wait') [enabled by default] src/db/ConnectionPool.c:136:16: warning: excess elements in struct initializer [enabled by default] src/db/ConnectionPool.c:136:16: warning: (near initialization for 'wait') [enabled by default] src/db/ConnectionPool.c:136:25: error: storage size of 'wait' isn't known struct timespec wait = {0, 0}; ^ src/db/ConnectionPool.c:136:25: warning: unused variable 'wait' [-Wunused-variable] Makefile:663: recipe for target 'src/db/ConnectionPool.lo' failed make[2]: *** [src/db/ConnectionPool.lo] Error 1 make[2]: Leaving directory '/var/tmp/portage/dev-db/libzdb-2.12/work/libzdb-2.12' Makefile:735: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/dev-db/libzdb-2.12/work/libzdb-2.12' Makefile:481: recipe for target 'all' failed make: *** [all] Error 2 * ERROR: dev-db/libzdb-2.12::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=dev-db/libzdb-2.12::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-db/libzdb-2.12::gentoo'`. * The complete build log is located at '/var/log/portage/dev-db:libzdb-2.12:20150325-122928.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-db/libzdb-2.12/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-db/libzdb-2.12/temp/environment'. * Working directory: '/var/tmp/portage/dev-db/libzdb-2.12/work/libzdb-2.12' * S: '/var/tmp/portage/dev-db/libzdb-2.12/work/libzdb-2.12' This is an amd64 stable chroot image at a hardened host acting as a tinderbox. The log is stored in amd64-hardened-stable_20150320//var/log/portage/_emerge_20150325-132942.log quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=dev-db%2Flibzdb Portage 2.2.14 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.8.3, glibc-2.20-r2, 3.19.2-hardened x86_64) ================================================================= System uname: Linux-3.19.2-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164756 total, 1074556 free KiB Swap: 16777212 total, 16749012 free Timestamp of tree: Tue, 24 Mar 2015 15:15:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.2_p53 dev-java/java-config: 2.2.0 dev-lang/perl: 5.20.1-r4 dev-lang/python: 2.7.9-r1, 3.3.5-r1, 3.4.1 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.13.11 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r4, 1.10.3-r1, 1.11.6-r1, 1.13.4 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.4 sys-devel/make: 4.1-r1 sys-kernel/linux-headers: 3.18 (virtual/os-headers) sys-libs/glibc: 2.20-r2 Repositories: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/python2.7/site-packages/buildbot/status/web /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cairo cli corefonts cracklib crypt cups cxx dbus dnssec dot dri drmkms dvd ecc extraengine ffmpeg fontconfig fortran fpm gd gdbm gif gtk gudev gui hardened iconv icu isag jadetex jpeg justify kvm lapack libav libkms libvirtd logrotate macvtap mbox minizip mmx mmxext modules multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pax_kernel pcre pcre16 plasma png policykit python qemu qt3support readline sdl session spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 svg tcpd theora thinkpad threads tiff tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 video vorbis xa xattr xkb xmp xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="pr esenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Does 3.0 compile?
(In reply to Johan Bergström from comment #1) > Does 3.0 compile? at an unstable chroot image - yes
Sorry, should've been more specific when asking. Does it compile on the same system as the one that fails with 2.12? If so, I'd suggest we stablereq it.
(In reply to Johan Bergström from comment #3) > Sorry, should've been more specific when asking. Does it compile on the same > system as the one that fails with 2.12? If so, I'd suggest we stablereq i Ah - ok. And yes, it compiles fine at a stable chroot box, where just this package is keyworded as ~amd64
Same error on my system. Other packages compile susccessfully. Haven't tried 3.0.
I am not against stabilizing 3.0 in general, but I am not using it myself yet on any production system. Maybe I'll try it out on one of them before stabilizing.
I'm seeing this too on several amd64 systems. However, on one of those systems I installed libzdb-2.12 before this ticket was created, and back then it installed just fine. sylvester ~ # qlop -gHv libzdb libzdb-2.12: Tue Mar 10 14:26:31 2015: 11 seconds libzdb: 1 times Must be another package update that causes this problem. FWIW, 3.0 installs fine for me as well.
I do wonder what is causing this, but I shall really try out libzdb 3.0 soon myself and then stabilize this. sorry for the long wait, but i've been quite busy outside Gentoo unfortunately
Created attachment 434048 [details] emerge-info.txt well, I'll attach files from another image with the sam efailure, maybe helps to realize the root causelibtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I./src -I/usr//include -Isrc -Isrc/util -Isrc/net -Isrc/db -Isrc/exceptions -Wno-address -Wno-pointer-sign -march=native -O2 -pipe -DSQLITEUNLOCK -Wall -Wunused -Wno-unused-label -funsigned-char -std=c99 -c src/db/ConnectionPool.c -fPIC -DPIC -o src/db/.libs/ConnectionPool.o src/db/ConnectionPool.c: In function 'doSweep': src/db/ConnectionPool.c:136:16: error: variable 'wait' has initializer but incomplete type struct timespec wait = {0, 0}; ^ src/db/ConnectionPool.c:136:16: warning: excess elements in struct initializer
Created attachment 434050 [details] dev-db:libzdb-2.12:20160512-083726.log
Created attachment 434052 [details] emerge-history.txt
Created attachment 434054 [details] environment
Not sure if this is a red herring or not, but it may help. I went looking to see what provides the struct timespec which is giving me this error and came across the following link, which had an interesting reference to glibc http://www.gnu.org/software/libc/manual/html_node/Elapsed-Time.html The GNU C Library provides two data types specifically for representing an elapsed time. They are used by various GNU C Library functions, and you can use them for your own purposes too. They’re exactly the same except that one has a resolution in microseconds, and the other, newer one, is in nanoseconds. I had just updated my glibc to sys-libs/glibc-2.23-r3:2.2::gentoo from [2.22-r4:2.2::gentoo] Coincidence?
(In reply to Daren Hayward from comment #13) > Not sure if this is a red herring or not, but it may help. > > I went looking to see what provides the struct timespec which is giving me > this error and came across the following link, which had an interesting > reference to glibc > http://www.gnu.org/software/libc/manual/html_node/Elapsed-Time.html > > The GNU C Library provides two data types specifically for representing an > elapsed time. They are used by various GNU C Library functions, and you can > use them for your own purposes too. They’re exactly the same except that one > has a resolution in microseconds, and the other, newer one, is in > nanoseconds. > > > I had just updated my glibc to sys-libs/glibc-2.23-r3:2.2::gentoo from > [2.22-r4:2.2::gentoo] > > Coincidence? Looks to be a red herring still fails with old glibc.
3.1 is in stable now
