Created attachment 381446 [details, diff] Patch to enable the hoomd molfile plugin The vmd ebuild does not build the hoomd molfile plugin. This is a default option included in most of the binary builds of vmd offered upstream. I'm attaching a diff for the ebuild that adds the hoomd plugin. This requires the expat library.
+*vmd-1.9.2 (06 Mar 2015) + + 06 Mar 2015; Justin Lecher <jlec@gentoo.org> + +files/vmd-1.9.2-format-security.patch, +vmd-1.9.2.ebuild, + -vmd-1.9.1-r2.ebuild, -vmd-1.9.1.ebuild, metadata.xml: + Version BUmp; install optional plugins, #517886 +
Btw, sci-physics/hoomd-blue is now part of gx86!