The ebuild for 4.5.6 is incorrect for two reasons. !!! Couldn't download 'GMT4.5.6_src.tar.bz2'. Aborting. * Fetch failed for 'sci-geosciences/gmt-4.5.6', Log file: * '/var/tmp/portage/sci-geosciences/gmt-4.5.6/temp/build.log' Downloading 'ftp://ftp.geologi.uio.no/pub/gmt/GMT4.5.6_src.tar.bz2' No such file or directory is the result. By visiting ftp://ftp.geologi.uio.no/pub/gmt/ one can see that the ebuild should read: gmt-4.5.6_src.tar.bz2 **Reason One**: -that is, there should be a dash between gmt and the 4. The same error has been made for all of the *.tar.bz2 files in the ebuild if one choose the gmtfull flag **Reason Two**: Unfortunately, all of the mirrors' downloads for version 4.5.6 are now in a directory called .../gmt/legacy/ so the simple fix of adding a dash in the correct place will not fix this issue!!! perhaps instead of fixing the ebuilds, maybe bump the version to 5.1.1 because, even after I downloaded 4.5.6 manually into /usr/portage/distfiles/, the compilation stage failed (yet another bug).
Portage 2.2.8-r1 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.12.21-gentoo-r1 x86_64) ================================================================= System uname: Linux-3.12.21-gentoo-r1-x86_64-Intel-R-_Core-TM-_i3-2370M_CPU_@_2.40GHz-with-gentoo-2.2 KiB Mem: 3742664 total, 2535908 free KiB Swap: 9214972 total, 9214972 free Timestamp of tree: Sun, 06 Jul 2014 01:45:01 +0000 ld GNU ld (Gentoo 2.23.2 p1.0) 2.23.2 app-shells/bash: 4.2_p45 dev-lang/python: 2.7.6, 3.3.3 dev-util/cmake: 2.8.12.2 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6, 1.12.6, 1.13.4 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.7.3-r1 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.13 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://gentoo.osuosl.org/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync3.us.gentoo.org/gentoo-portage" USE="X a52 aac aalib acc acl acpi alsa amd64 bash-completion bcmath berkdb bindist blas bluetooth branding bzip2 cairo cdda cdparanoai cdr cli consolekit cracklib crypt css ctype cups cxx dbus dga dpi dri dts dvd dvdr emboss encode exif fam fbcon ffmpeg firefox flac fontconfig fortran gdbm gif gmp gpm gsm gtk iconv imagemagick ipv6 jpeg jpeg2k kerberos lame latex lcms ldap libcaca libnotify lzma mad matroska mhash mmx mng modules mp3 mp4 mpeg multilib ncurses networkmanager nls nptl odbc ogg opengl openmp pam pango pcre pdf png policykit ppds python qt3support qt4 quicktime raw readline recode sdl session smp speex spell sse sse2 ssl startup-notification svg syslog tcpd theora tiff truetype udev udisks unicode upower usb v4l vcd vorbis wifi win32codecs wmf wxwidgets x264 xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq
Confirmed here: # emerge sci-geosciences/gmt Calculating dependencies... done! >>> Verifying ebuild manifests >>> Emerging (1 of 1) sci-geosciences/gmt-4.5.6 >>> Downloading 'ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:21:40-- ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving mirror.geosci.usyd.edu.au... 129.78.124.227 Connecting to mirror.geosci.usyd.edu.au|129.78.124.227|:21... failed: Connection timed out. Retrying. --2014-07-22 06:22:42-- ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2 (try: 2) => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Connecting to mirror.geosci.usyd.edu.au|129.78.124.227|:21... failed: Connection timed out. Retrying. --2014-07-22 06:23:44-- ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2 (try: 3) => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Connecting to mirror.geosci.usyd.edu.au|129.78.124.227|:21... failed: Connection timed out. Giving up. >>> Downloading 'ftp://ibis.grdl.noaa.gov/pub/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:24:44-- ftp://ibis.grdl.noaa.gov/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving ibis.grdl.noaa.gov... 140.90.107.15 Connecting to ibis.grdl.noaa.gov|140.90.107.15|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/gmt ... No such directory 'pub/gmt'. >>> Downloading 'ftp://ftp.geologi.uio.no/pub/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:24:45-- ftp://ftp.geologi.uio.no/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving ftp.geologi.uio.no... 128.39.3.170, 2001:700:0:12e::f70 Connecting to ftp.geologi.uio.no|128.39.3.170|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/gmt ... done. ==> SIZE GMT4.5.6_src.tar.bz2 ... done. ==> PASV ... done. ==> RETR GMT4.5.6_src.tar.bz2 ... No such file 'GMT4.5.6_src.tar.bz2'. >>> Downloading 'ftp://ftp.iag.usp.br/pub/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:24:46-- ftp://ftp.iag.usp.br/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving ftp.iag.usp.br... 143.107.18.8 Connecting to ftp.iag.usp.br|143.107.18.8|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/gmt ... done. ==> SIZE GMT4.5.6_src.tar.bz2 ... done. ==> PASV ... done. ==> RETR GMT4.5.6_src.tar.bz2 ... No such file 'GMT4.5.6_src.tar.bz2'. >>> Downloading 'ftp://ftp.soest.hawaii.edu/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:24:50-- ftp://ftp.soest.hawaii.edu/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving ftp.soest.hawaii.edu... 128.171.151.230 Connecting to ftp.soest.hawaii.edu|128.171.151.230|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /gmt ... done. ==> SIZE GMT4.5.6_src.tar.bz2 ... done. ==> PASV ... done. ==> RETR GMT4.5.6_src.tar.bz2 ... No such file 'GMT4.5.6_src.tar.bz2'. >>> Downloading 'ftp://ftp.iris.washington.edu/pub/gmt/GMT4.5.6_src.tar.bz2' --2014-07-22 06:24:52-- ftp://ftp.iris.washington.edu/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving ftp.iris.washington.edu... 128.95.166.129 Connecting to ftp.iris.washington.edu|128.95.166.129|:21... connected. Logging in as anonymous ... Logged in! ==> SYST ... done. ==> PWD ... done. ==> TYPE I ... done. ==> CWD (1) /pub/gmt ... done. ==> SIZE GMT4.5.6_src.tar.bz2 ... done. ==> PASV ... done. ==> RETR GMT4.5.6_src.tar.bz2 ... No such file 'GMT4.5.6_src.tar.bz2'. !!! Couldn't download 'GMT4.5.6_src.tar.bz2'. Aborting. * Fetch failed for 'sci-geosciences/gmt-4.5.6', Log file: * '/var/tmp/portage/sci-geosciences/gmt-4.5.6/temp/build.log' >>> Failed to emerge sci-geosciences/gmt-4.5.6, Log file: >>> '/var/tmp/portage/sci-geosciences/gmt-4.5.6/temp/build.log' * Messages for package sci-geosciences/gmt-4.5.6: * Fetch failed for 'sci-geosciences/gmt-4.5.6', Log file: * '/var/tmp/portage/sci-geosciences/gmt-4.5.6/temp/build.log' See also bugs https://bugs.gentoo.org/show_bug.cgi?id=492792 and https://bugs.gentoo.org/show_bug.cgi?id=512834 and note that both of those are also now out-of-date: latest release on ftp.iris.washington.edu is now 5.1.1 Additional: mirror.geosci.usyd.edu.au appears to be down.
and I do get her >>> Downloading 'ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2' pathconf: Permission denied <------------------------------ --2015-01-11 07:06:46-- ftp://mirror.geosci.usyd.edu.au/pub/gmt/GMT4.5.6_src.tar.bz2 => '/usr/portage/distfiles/GMT4.5.6_src.tar.bz2' Resolving mirror.geosci.usyd.edu.au... 129.78.124.227 Connecting to mirror.geosci.usyd.edu.au|129.78.124.227|:21... failed: Connection timed out. Retrying.e :
*** This bug has been marked as a duplicate of bug 561202 ***