>>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-physics/geant-python-4.10.00/work/geant4.10.00/environments/g4py ... * python3_2: running run_in_build_dir run_configure Checking for system type ... linuxx8664gcc Checking for prefix ... /usr Checking for lib dir ... /usr/lib Checking for G4 include dir ... /usr/include/Geant4 Checking for G4 lib dir ... /usr/lib64 Checking for G4 libs are shared libraray ... ok Checking for Python include dir (pyconfig.h) ... /usr/include/python3.2 Checking for Python lib dir ... /usr/lib64 Checking for Boost include dir (boost/python.hpp) ... no ### /usr/include (boost-incdir) is invalid. Try --with-boost-incdir option. * ERROR: sci-physics/geant-python-4.10.00::gentoo failed (configure phase): * configure failed Portage 2.2.10 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.3, glibc-2.19-r1, 3.15.0-gentoo x86_64) ================================================================= System uname: Linux-3.15.0-gentoo-x86_64-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2 KiB Mem: 7919000 total, 1419288 free KiB Swap: 25165812 total, 25079808 free Timestamp of tree: Unknown ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p47 dev-lang/python: 2.7.6-r1, 3.2.5-r4, 3.3.5, 3.4.0 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.14.1 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.15 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="-j2" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync parallel-fetch preserve-libs protect-owned sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirrors.163.com/gentoo/ ftp://ftp.kaist.ac.kr/gentoo/ http://ftp.kaist.ac.kr/pub/gentoo/ http://gentoo.mirrors.hoobly.com/ http://gentoo.mirrors.easynews.com/linux/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg kde kipi lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf phonon plasma png policykit ppds qt3support qt4 readline sdl semantic-desktop session spell sse sse2 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 pypy python3_3 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
I could not reproduce this bug, sci-physics/geant-python-4.10.00 emerged just fine.
Created attachment 408954 [details] emerge history same here : tinderbox@tor-relay ~ $ cat ~/amd64-plasma-unstable_20150811-144142//tmp/issues/20150813-205212_sci-physics_geant-python-4.10.00/info ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-plasma-unstable_20150811-144142) at a hardened host acting as a tinderbox. Portage 2.2.20.1 (python 2.7.10-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-4.9.3, glibc-2.21-r1, 4.1.4-hardened x86_64) ================================================================= System uname: Linux-4.1.4-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164628 total, 1150548 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Thu, 13 Aug 2015 17:45:01 +0000 sh bash 4.3_p39 ld GNU ld (Gentoo 2.25.1 p1.0) 2.25.1 app-shells/bash: 4.3_p39::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.22.0::gentoo dev-lang/python: 2.7.10::gentoo, 3.4.3::gentoo dev-util/cmake: 3.3.0::gentoo dev-util/pkgconfig: 0.28-r3::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.17::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r1::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1::gentoo sys-devel/gcc: 4.8.4::gentoo, 4.9.3::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.6-r1::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.21-r1::gentoo Repositories: local location: /usr/local/portage masters: gentoo kde location: /var/lib/layman/kde sync-type: laymansync sync-uri: git://anongit.gentoo.org/proj/kde.git masters: gentoo priority: 50 gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 9999 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/i2pd/certificates" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri drmkms dts dvb dvd dvdr emboss encode exif fam ffmpeg firefox flac fortran fpm gd gdbm gif glamor gpm gtk3 iconv inifile ipv6 jpeg kde kipi lcms ldap libnotify logrotate mad mbox minizip mmx mmxext mng modules mp3 mp4 mpeg multilib ncurses nls nptl nss ogg opengl openmp pam pango pax_kernel pcre pdf phonon plasma png policykit ppds qml qt3support qt4 qt5 readline sdl semantic-desktop session sockets spell sse sse2 ssl startup-notification svg system-libvpx tcpd thinkpad threads tiff truetype udev udisks uml unicode upower usb usbredir vorbis widgets wxwidgets x264 xcb xcomposite xinerama xml xscreensaver xslt xv xvid zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
It appears no one is using this package, unless the error is not permanent? Package is blocking sci-physics/geant cleanup.
Additionally, lots of compile errors that somehow are not fatal, and the package installs *something*, but clearly a wreckage. (In reply to Andreas Sturmlechner from comment #3) > It appears no one is using this package, unless the error is not permanent? Let's find out right away.
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f49c6f7bf80f2aab255b8c9ff1fa4238ca840f0b commit f49c6f7bf80f2aab255b8c9ff1fa4238ca840f0b Author: Andreas Sturmlechner <asturm@gentoo.org> AuthorDate: 2018-01-19 18:04:34 +0000 Commit: Andreas Sturmlechner <asturm@gentoo.org> CommitDate: 2018-01-19 18:39:35 +0000 profiles: Mask sci-physics/geant-python for removal Bug: https://bugs.gentoo.org/513564 profiles/package.mask | 5 +++++ 1 file changed, 5 insertions(+)}
I think this package should be fine for cleaning up. If someone complains I can fix it and add it back later.
I fine with this removal.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=deef8f3131b9ae29fe2136b9f784f6f3c0682388 commit deef8f3131b9ae29fe2136b9f784f6f3c0682388 Author: Andreas Sturmlechner <asturm@gentoo.org> AuthorDate: 2018-02-18 12:16:26 +0000 Commit: Andreas Sturmlechner <asturm@gentoo.org> CommitDate: 2018-02-18 12:16:26 +0000 profiles: Remove last-rited sci-physics/geant-python Closes: https://bugs.gentoo.org/513564 profiles/package.mask | 5 - sci-physics/geant-python/Manifest | 2 - .../files/geant-python-4.10.0-config.patch | 27 ----- .../files/geant-python-4.10.0-polycone.patch | 15 --- .../files/geant-python-4.9.5-visverbose.patch | 13 --- .../geant-python/geant-python-4.10.00.ebuild | 122 --------------------- .../geant-python/geant-python-4.9.6_p02.ebuild | 120 -------------------- sci-physics/geant-python/metadata.xml | 11 -- 8 files changed, 315 deletions(-)
