When upgrading gentoo prefix system on MacOS (10.9.2), it failed at configure phase of =dev-libs/apr-1.5.1-r1, with the following messages: >>> Emerging (1 of 2) dev-libs/apr-1.5.1-r1 * apr-1.5.1.tar.bz2 SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking apr-1.5.1.tar.bz2 to /Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work >>> Source unpacked in /Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work >>> Preparing source in /Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1 ... * Applying apr-1.5.0-mint.patch ... [ ok ] * Applying apr-1.5.0-libtool.patch ... [ ok ] * Applying apr-1.5.0-cross-types.patch ... [ ok ] * Applying apr-1.5.0-sysroot.patch ... [ ok ] * Applying apr-1.5.1-parallel_make_install.patch ... [ ok ] * Running eautoreconf in '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1' ... !!! Section 'gentoo' in repos.conf has name different from repository name 'gentoo_prefix' set inside repository !!! Section 'gentoo' in repos.conf has name different from repository name 'gentoo_prefix' set inside repository !!! Section 'gentoo' in repos.conf has name different from repository name 'gentoo_prefix' set inside repository * Running glibtoolize --install --copy --force ... [ ok ] * Running aclocal -I build ... [ ok ] * Running autoconf -I build ... [ ok ] * Running autoheader -I build ... [ ok ] * Running elibtoolize in: apr-1.5.1/ * Applying target-nm/2.4.2 patch ... * Applying darwin-conf/2.2.4 patch ... * Running elibtoolize in: apr-1.5.1/build/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.2 patch ... * Darwin patch set 'darwin-conf' failed to apply! * Applying config.layout.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1 ... * econf: updating apr-1.5.1/build/config.guess with /Users/yanll/Gentoo/usr/share/gnuconfig/config.guess * econf: updating apr-1.5.1/build/config.sub with /Users/yanll/Gentoo/usr/share/gnuconfig/config.sub ./configure --prefix=/Users/yanll/Gentoo/usr --build=x86_64-apple-darwin13 --host=x86_64-apple-darwin13 --mandir=/Users/yanll/Gentoo/usr/share/man --infodir=/Users/yanll/Gentoo/usr/share/info --datadir=/Users/yanll/Gentoo/usr/share --sysconfdir=/Users/yanll/Gentoo/etc --localstatedir=/Users/yanll/Gentoo/var/lib --enable-layout=gentoo --enable-nonportable-atomics --enable-posix-shm --enable-threads --disable-static --with-devrandom=/dev/urandom checking build system type... x86_64-apple-darwin13 checking host system type... x86_64-apple-darwin13 checking target system type... x86_64-apple-darwin13 Configuring APR library Platform: x86_64-apple-darwin13 checking for working mkdir -p... yes APR Version: 1.5.1 checking for chosen layout... gentoo checking for x86_64-apple-darwin13-gcc... x86_64-apple-darwin13-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-apple-darwin13-gcc accepts -g... yes checking for x86_64-apple-darwin13-gcc option to accept ISO C89... none needed checking for a sed that does not truncate output... /Users/yanll/Gentoo/bin/sed Applying APR hints file rules for x86_64-apple-darwin13 setting CPPFLAGS to "-DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp" setting apr_posixsem_is_global to "yes" (Default will be unix) checking whether make sets $(MAKE)... yes checking how to run the C preprocessor... /lib/cpp configure: error: in `/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1': configure: error: C preprocessor "/lib/cpp" fails sanity check See `config.log' for more details !!! Please attach the following file when seeking support: !!! /Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1/config.log * ERROR: dev-libs/apr-1.5.1-r1::gentoo_prefix failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 93: Called src_configure * environment, line 2770: Called econf '--enable-layout=gentoo' '--enable-nonportable-atomics' '--enable-posix-shm' '--enable-threads' '--disable-static' '--with-devrandom=/dev/urandom' * phase-helpers.sh, line 584: Called die * The specific snippet of code: * die "econf failed" * * If you need support, post the output of `emerge --info '=dev-libs/apr-1.5.1-r1::gentoo_prefix'`, * the complete build log and the output of `emerge -pqv '=dev-libs/apr-1.5.1-r1::gentoo_prefix'`. * The complete build log is located at '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/temp/build.log'. * The ebuild environment file is located at '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/temp/environment'. * Working directory: '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1' * S: '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1' >>> Failed to emerge dev-libs/apr-1.5.1-r1, Log file: >>> '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/temp/build.log' * Messages for package dev-libs/apr-1.5.1-r1: * Darwin patch set 'darwin-conf' failed to apply! * ERROR: dev-libs/apr-1.5.1-r1::gentoo_prefix failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 93: Called src_configure * environment, line 2770: Called econf '--enable-layout=gentoo' '--enable-nonportable-atomics' '--enable-posix-shm' '--enable-threads' '--disable-static' '--with-devrandom=/dev/urandom' * phase-helpers.sh, line 584: Called die * The specific snippet of code: * die "econf failed" * * If you need support, post the output of `emerge --info '=dev-libs/apr-1.5.1-r1::gentoo_prefix'`, * the complete build log and the output of `emerge -pqv '=dev-libs/apr-1.5.1-r1::gentoo_prefix'`. * The complete build log is located at '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/temp/build.log'. * The ebuild environment file is located at '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/temp/environment'. * Working directory: '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1' * S: '/Users/yanll/Gentoo/var/tmp/portage/dev-libs/apr-1.5.1-r1/work/apr-1.5.1' In its config.log: configure:9313: checking how to run the C preprocessor configure:9344: x86_64-apple-darwin13-gcc -E -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp conftest.c x86_64-apple-darwin13-gcc: error: unrecognized command line option '-no-cpp-precomp' configure:9344: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include <limits.h> | #else | # include <assert.h> | #endif | Syntax error configure:9344: x86_64-apple-darwin13-gcc -E -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp conftest.c x86_64-apple-darwin13-gcc: error: unrecognized command line option '-no-cpp-precomp' configure:9344: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "" | #define PACKAGE_TARNAME "" | #define PACKAGE_VERSION "" | #define PACKAGE_STRING "" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | /* end confdefs.h. */ | #ifdef __STDC__ | # include <limits.h> | #else | # include <assert.h> | #endif | Syntax error configure:9344: x86_64-apple-darwin13-gcc -E -traditional-cpp -DDARWIN -DSIGPROCMASK_SETS_THREAD_MASK -no-cpp-precomp conftest.c Reproducible: Always $ emerge --info Portage 2.2.8-prefix (prefix/darwin/macos/10.9/x64, gcc-4.7.3, unavailable, 13.1.0 x86_64) ================================================================= System uname: Darwin-13.1.0-x86_64-i386-64bit Timestamp of tree: Fri, 02 May 2014 14:08:02 +0000 app-shells/bash: 4.2_p45-r1 dev-lang/python: 2.7.5-r4, 3.3.3 dev-util/pkgconfig: 0.28-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.14 sys-devel/gcc: 4.7.3-r1 sys-devel/gcc-config: 1.8-r00.1 sys-devel/libtool: 2.4.2 sys-devel/make: 4.0-r1 Repositories: gentoo_prefix ACCEPT_KEYWORDS="~x64-macos" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-apple-darwin13" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-apple-darwin13" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/Users/yanll/Gentoo/usr/portage/distfiles" FCFLAGS="" FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-dead_strip_dylibs" MAKEOPTS="" PKGDIR="/Users/yanll/Gentoo/usr/portage/packages" PORTAGE_CONFIGROOT="/Users/yanll/Gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/Users/yanll/Gentoo/var/tmp" PORTDIR="/Users/yanll/Gentoo/usr/portage" PORTDIR_OVERLAY="" USE="aqua coreaudio cracklib cxx ipv6 mmx mmxext modules ncurses nls objc objc++ prefix readline sse sse2 ssl unicode x64-macos zlib" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="Darwin" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse" KERNEL="Darwin" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
What is the output of "type -a cpp" ?
$ type -a cpp cpp is /Users/yanll/Gentoo/usr/bin/cpp cpp is /usr/bin/cpp
We should just rip out -no-cpp-precomp from the flags configure insists on injecting, as that probably doesn't work with Clang or something.
1.5.2 appears to have this fixed, but it has another problem: .5.2/include/private -o passwd/apr_getpass.lo -c passwd/apr_getpass.c && touch passwd/apr_getpass.lo libtool: Version mismatch error. This is libtool 2.4.6, but the libtool: definition of this LT_INIT comes from libtool 2.4.2. libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6 libtool: and run autoconf again. Makefile:134: recipe for target 'tools/gen_test_char.lo' failed make[1]: *** [tools/gen_test_char.lo] Error 63 make[1]: *** Waiting for unfinished jobs.... libtool: Version mismatch error. This is libtool 2.4.6, but the libtool: definition of this LT_INIT comes from libtool 2.4.2. libtool: You should recreate aclocal.m4 with macros from libtool 2.4.6 libtool: and run autoconf again. /Users/fabian/Gentoo-10.10/var/tmp/portage/dev-libs/apr-1.5.2/work/apr-1.5.2/build/apr_rules.mk:206: recipe for target 'passwd/apr_getpass.lo' failed make[1]: *** [passwd/apr_getpass.lo] Error 63
apr-1.7.0 compiles fine, at last ...
