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Bug 505872 - sci-libs/vtk-6.0.0 - Medical4.cxx:26:36: fatal error: vtkVolumeRayCastMapper.h: No such file or directory
Summary: sci-libs/vtk-6.0.0 - Medical4.cxx:26:36: fatal error: vtkVolumeRayCastMapper....
Status: RESOLVED DUPLICATE of bug 253881
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Justin Lecher (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-03-26 12:04 UTC by Arne Babenhauserheide
Modified: 2014-12-26 12:04 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.gz (build.log.gz,133.66 KB, application/x-gzip)
2014-03-26 12:06 UTC, Arne Babenhauserheide
Details

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Description Arne Babenhauserheide 2014-03-26 12:04:45 UTC
sci-libs/vtk-6.0.0 does not build for me. It dies with “vtk fatal error: vtkVolumeRayCastMapper.h”.

sci-libs/vtk-5.10.1 still builds.

Reproducible: Always




# emerge --info
!!! Repository 'piczu' is missing masters attribute in '/var/lib/layman/piczu/metadata/layout.conf'
!!! Set 'masters = gentoo' in this file for future compatibility
Portage 2.2.9-r1 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.2, glibc-2.17, 3.10.7-gentoo x86_64)
=================================================================
System uname: Linux-3.10.7-gentoo-x86_64-Intel-R-_Core-TM-_i3-2100_CPU_@_3.10GHz-with-gentoo-2.2
KiB Mem:     8069496 total,    950592 free
KiB Swap:    1060284 total,    500440 free
Timestamp of tree: Mon, 24 Mar 2014 09:30:01 +0000
ld GNU ld (GNU Binutils) 2.23.2
app-shells/bash:          4.2_p45
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.5-r3, 3.2.5-r3, 3.3.3
dev-util/cmake:           2.8.11.2
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6, 1.13.4
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.8.2-r1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo kde lisp mv piczu science toolchain wtk kitbab
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA Intel-SDP AdobeFlash-10.3 AdobeFlash-11.x skype-4.0.0.7-copyright skype-4.0.0.7-third-party_attributions.txt skype-eula"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--jobs=2 --keep-going"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg candy config-protect-if-modified distlocks downgrade-backup ebuild-locks fixlafiles merge-sync news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-backup unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="de_DE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/kde /var/lib/layman/lisp /var/lib/layman/mv /var/lib/layman/piczu /var/lib/layman/science /var/lib/layman/toolchain /var/lib/layman/wtk /usr/local/portage"
USE="X a52 aac aalib acl acpi akode alsa amd64 amrnb amrwb apng bash-completion bbdb berkdb bluetooth branding bzip2 cairo cdda cdf cdr cli clocene compat consolekit contrib cracklib crypt crypto cups cxx dbus declarative dri dts dv dvd dvdnav dvdr ebook emacs emboss encode equalizer examples exif fam firefox flac fortran fortran95 futures gd gdbm gif git gmp go gpm gtk gzip-el hdf hdf5 hdfview iconv ipv6 jingle jit jpeg kate kde kdepim kerberos kipi ladspa lapack latex lcms ldap libcaca libnotify lto m17n-lib mad mail matroska mercurial mikmod mmx mng modules mp2 mp3 mp4 mpeg mpi mpi-threads multimedia musepack mysql ncurses nemesi netcdf networking nfsidmap nfsv4 nfsv41 nls nptl nsplugin nss objc objc++ objc-gc ogg openal openexr opengl openmp openpgp opus otr packrat pam pango pcre pdf phonon places planner plasma plot plugins png pnm policykit ppds pvr python qt3support qt4 readline real romio samba sasl schroedinger sdl semantic-desktop session slp sna sound speex spell srfi1 sse sse2 ssl startup-notification subversion svg szip tcpd text theora threads tiff toolkit-scroll-bars tools truetype udev udisks unicode upower usb utils v4l v4l2 vaapi video vlc vorbis vpx web win32codecs wxwidgets x264 xcb xcomposite xft xinerama xml xmp xscreensaver xv xvid zeroconf zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de eo en" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="intel vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
Comment 1 Arne Babenhauserheide 2014-03-26 12:06:44 UTC
Created attachment 373574 [details]
build.log.gz

here’s the compressed build log. Sadly it was too big for attaching it as plaiin text.
Comment 2 Alex Xu (Hello71) 2014-03-26 15:06:19 UTC
Smells like a package trying to use system headers.
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2014-03-27 07:09:46 UTC
Could please test different USE combinations? Do you have paraview installed?
Comment 4 Arne Babenhauserheide 2014-03-28 06:50:49 UTC
I have paraview installed, yes.

Which USE-combinations would you need tested?
Comment 5 Justin Lecher (RETIRED) gentoo-dev 2014-03-28 07:36:16 UTC
(In reply to Arne Babenhauserheide from comment #4)
> I have paraview installed, yes.
> 

paraview is the problem. Try remove paraview and isntall vtk. You can install paraview afterwards.

Nevertheless it sucks that vtk is looking for header files in the system install of the builddir
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2014-12-26 12:04:22 UTC

*** This bug has been marked as a duplicate of bug 253881 ***