Both the release and the svn version in the science overlay fail during the linking phase (see attached build log, both release and svn version fail at the same step). There are additional problems. The release version (6.0_p4651) of all elmer-related packages have wrong/outdated checksums (probably some changes on the side of SourceForge). Listed below are the packages in question: sc-libs/matc sci-libs/elmer-eio sci-libs/elmer-hutiter sci-misc/elmer-elmergrid sci-misc/elmer-fem sci-misc/elmer-front sci-misc/elmer-meshgen2d sci-misc/elmer-meta sci-misc/elmer-post The svn version (-9999) suffers from another problem: Unless AUTOTOOLS_IN_SOURCE_BUILD=1 is not set in the elmder-9999-fem.ebuild, compilation fails as make tries to copy the file mpif_stub.h but doesn't find it. (Thanks to IRC for giving me a hand how to at least bypass that problem.) Reproducible: Always Steps to Reproduce: 1. add the science overlay via layman -a science 2. keyword the necessary packages to compile sci-misc/elmer-meta-6.0_p4651 (or -9999) =sci-misc/elmer-fem-6.0_p4651 ~x86 =sci-misc/elmer-front-6.0_p4651 ~x86 =sci-libs/elmer-eio-6.0_p4651 ~x86 =sci-misc/elmer-post-6.0_p4651 ~x86 =sci-misc/elmer-meshgen2d-6.0_p4651 ~x86 =sci-libs/elmer-hutiter-6.0_p4651 ~x86 =sci-libs/matc-6.0_p4651 ~x86 =sci-misc/elmer-meta-6.0_p4651 ~x86 =sci-misc/elmer-elmergrid-6.0_p4651 ~x86 3. try to emerge elmer-meta Actual Results: compilation fails at different steps, depending on which version you try to emerge and how many of the above problems you have solved Expected Results: elmer-meta compiles successfully emerge --info Portage 2.2.7 (default/linux/x86/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.13.2-tuxonice i686) ================================================================= System uname: Linux-3.13.2-tuxonice-i686-Intel-R-_Pentium-R-_M_processor_1.73GHz-with-gentoo-2.2 KiB Mem: 1024940 total, 118708 free KiB Swap: 1004020 total, 963944 free Timestamp of tree: Mon, 24 Feb 2014 11:00:01 +0000 ld GNU ld (GNU Binutils) 2.23.2 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 4.2_p45 dev-java/java-config: 2.1.12-r1 dev-lang/python: 2.7.5-r3, 3.2.5-r3, 3.3.3 dev-util/cmake: 2.8.11.2 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.4_p6::<unknown repository>, 1.5::<unknown repository>, 1.6.3::<unknown repository>, 1.7.9-r1::<unknown repository>, 1.8.5-r3::<unknown repository>, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.4.5, 4.5.4, 4.6.3, 4.7.3-r1 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo science ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium-m -O2 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=pentium-m -O2 -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -march=i686 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -march=i686 -pipe" GENTOO_MIRRORS="ftp://de-mirror.org/gentoo/ ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://mirror.netcologne.de/gentoo/ ftp://gd.tuwien.ac.at/opsys/linux/gentoo/ ftp://mirror.csclub.uwaterloo.ca/gentoo-distfiles/" LANG="de_DE.UTF-8" LC_ALL="de_DE.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science" USE="3ds 7zip X a52 aac acl acpi alsa amr arj asf audacious audiofile bash-completion battery berkdb blender-game bluetooth branding bzip2 cairo cal3d canna cdda cdparanoia cdr cdrom chardet chroot cjk cli colordiff consolekit cpufreq cracklib crypt cscope cups curl cxx dbus dcraw device-mapper dmi dri dts dv dvd dvdnav dvdr eap-sim effects emboss enca encode exif fam fat ffmpeg firefox flac flexresp2 fluidsynth fortran fpx freewnn ftp fuse g3dvl gdbm gif gimp gimpprint gmedia gnutls grace gre gs gsm gtk hddtemp hybrid-auth i8x0 iconv icq id3 id3tag ieee1394 imagemagick imap imlib immqt-bc inkjar ipv6 jbig jfs jpeg jpeg2k kpathsea ladspa laptop latex lcms lha libnotify libsamplerate lm_sensors logrotate loop-aes lzo mad memlimit midi migemo mime mjpeg mmap mmx mmxext mng modplug modules mp2 mp3 mp4 mpeg mplayer musepack ncurses nls no-old-linux nptl nsplugin nuv offensive ogg on-the-fly-crypt openal openexr opengl openmp oscar pam pango pcmcia pcre pdf pic plotutils plugin plugins png policykit posix postproc ppds print qt-static qt3support qt4 rar rdesktop readline reiser4 reiserfs replytolist resolvconf sasl scanner sdl session slp sndfile spell sse sse2 ssl startup-notification subtitles svg symlink tcpd tetex theora tidy tiff tk truetype tta type1 udev udisks unicode upower usb userlocales vamp vcd vim vim-syntax vim-with-x vorbis wavpack wifi wireshark wma wmf wmp wps wxwidgets x264 x86 xcb xcomposite xetex xfs xine xinerama xml xpm xscreensaver xv xvid xvmc yaepg zip zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse synaptics evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de ja" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
Created attachment 371362 [details] build.log
Is this still an issue with version 9.0?
Created attachment 714630 [details] emerge.log amd64
Created attachment 714633 [details] emerge-history amd64
Created attachment 714636 [details] emerge-info.txt amd64
Created attachment 714639 [details] etc/portage amd64
Created attachment 714642 [details] ebuildtester emerge log amd64
The package installs correctly on amd64 with the default USE flags of none. Attached are my logs from within the ebuildtester docker image. However, this bug was files for x86, and I do not have any x86 hardware.
