When I start sci-chemistry/avogadro-1.1.0 I get a segfault. The segfault is always reproducible. $ avogadro "Avogadro version: 1.1.0 Git: LibAvogadro version: 1.1.0 Git: " Locale: "C" Libavogadro translations not found. System has OpenGL support. About to test OpenGL capabilities. OpenGL capabilities found: Double Buffering. Direct Rendering. Antialiasing. Loading plugins: "/usr/bin/../lib64/avogadro/1_1" Searching for plugins in "/usr/lib64/avogadro/1_1" Searching for plugins in "/usr/lib64/avogadro/1_1/colors" Searching for plugins in "/usr/lib64/avogadro/1_1/engines" Searching for plugins in "/usr/lib64/avogadro/1_1/extensions" Searching for plugins in "/usr/lib64/avogadro/1_1/tools" Loading plugins: "/home/kalle/.avogadro/1_1/plugins" X Error: RenderBadPicture (invalid Picture parameter) 141 Extension: 138 (RENDER) Minor opcode: 7 (RenderFreePicture) Resource id: 0x3e0001b X Error: RenderBadPicture (invalid Picture parameter) 141 Extension: 138 (RENDER) Minor opcode: 7 (RenderFreePicture) Resource id: 0x3e00022 Segmentation fault Here is the gdb output: GNU gdb (Gentoo 7.6 p1) 7.6 Copyright (C) 2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-pc-linux-gnu". For bug reporting instructions, please see: <http://bugs.gentoo.org/>... Reading symbols from /usr/bin/avogadro...Reading symbols from /usr/lib64/debug/usr/bin/avogadro.debug...done. done. (gdb) run Starting program: /usr/bin/avogadro warning: Could not load shared library symbols for linux-vdso.so.1. Do you need "set solib-search-path" or "set sysroot"? [Thread debugging using libthread_db enabled] Using host libthread_db library "/lib64/libthread_db.so.1". "Avogadro version: 1.1.0 Git: LibAvogadro version: 1.1.0 Git: " Locale: "sv_SE" Translation successfully loaded. System has OpenGL support. About to test OpenGL capabilities. OpenGL capabilities found: Double Buffering. Direct Rendering. Antialiasing. Loading plugins: "/usr/bin/../lib64/avogadro/1_1" Searching for plugins in "/usr/lib64/avogadro/1_1" Searching for plugins in "/usr/lib64/avogadro/1_1/colors" Searching for plugins in "/usr/lib64/avogadro/1_1/engines" Searching for plugins in "/usr/lib64/avogadro/1_1/extensions" Searching for plugins in "/usr/lib64/avogadro/1_1/tools" Loading plugins: "/home/kalle/.avogadro/1_1/plugins" [New Thread 0x7fffd8a3c700 (LWP 15744)] X Error: RenderBadPicture (invalid Picture parameter) 141 Extension: 138 (RENDER) Minor opcode: 7 (RenderFreePicture) Resource id: 0x3c0001b [New Thread 0x7fffd36da700 (LWP 15745)] X Error: RenderBadPicture (invalid Picture parameter) 141 Extension: 138 (RENDER) Minor opcode: 7 (RenderFreePicture) Resource id: 0x3c00022 Program received signal SIGSEGV, Segmentation fault. 0x00007ffff73aa188 in QX11Info::screen (this=this@entry=0x8edb20) at kernel/qx11info_x11.cpp:476 476 { return x11data ? x11data->screen : QX11Info::appScreen(); } (gdb) bt #0 0x00007ffff73aa188 in QX11Info::screen (this=this@entry=0x8edb20) at kernel/qx11info_x11.cpp:476 #1 0x00007ffff7d27613 in QGLWidget::event (this=0x8ed8f0, e=0x7fffffffcb70) at qgl.cpp:4317 #2 0x00007ffff7321aac in QApplicationPrivate::notify_helper (this=this@entry=0x6d4d90, receiver=receiver@entry=0x8ed8f0, e=e@entry=0x7fffffffcb70) at kernel/qapplication.cpp:4562 #3 0x00007ffff7323f6d in QApplication::notify (this=0x7fffffffdb20, receiver=0x8ed8f0, e=0x7fffffffcb70) at kernel/qapplication.cpp:4423 #4 0x00007ffff6da0fed in QCoreApplication::notifyInternal (this=0x7fffffffdb20, receiver=receiver@entry=0x8ed8f0, event=event@entry=0x7fffffffcb70) at kernel/qcoreapplication.cpp:949 #5 0x00007ffff736269a in sendEvent (event=0x7fffffffcb70, receiver=0x8ed8f0) at ../../src/corelib/kernel/qcoreapplication.h:231 #6 QWidget::setParent (this=this@entry=0x8ed8f0, parent=parent@entry=0xb8bc60, f=...) at kernel/qwidget.cpp:10309 #7 0x00007ffff7362b02 in QWidget::setParent (this=this@entry=0x8ed8f0, parent=parent@entry=0xb8bc60) at kernel/qwidget.cpp:10160 #8 0x00007ffff7345d13 in QLayout::addChildWidget (this=this@entry=0x8ed770, w=w@entry=0x8ed8f0) at kernel/qlayout.cpp:1024 #9 0x00007ffff732cb52 in QBoxLayout::insertWidget (this=this@entry=0x8ed770, index=index@entry=-1, widget=widget@entry=0x8ed8f0, stretch=stretch@entry=0, alignment=...) at kernel/qboxlayout.cpp:1039 #10 0x00007ffff732ccdb in QBoxLayout::addWidget (this=this@entry=0x8ed770, widget=widget@entry=0x8ed8f0, stretch=stretch@entry=0, alignment=...) at kernel/qboxlayout.cpp:1119 #11 0x00000000004327cb in Avogadro::MainWindow::readSettings (this=0x8c16d0) at /usr/src/debug/sci-chemistry/avogadro-1.1.0/avogadro-1.1.0/avogadro/src/mainwindow.cpp:3252 #12 0x000000000043c084 in Avogadro::MainWindow::event (this=0x8c16d0, event=0x7fffffffd680) at /usr/src/debug/sci-chemistry/avogadro-1.1.0/avogadro-1.1.0/avogadro/src/mainwindow.cpp:646 #13 0x00007ffff7321aac in QApplicationPrivate::notify_helper (this=this@entry=0x6d4d90, receiver=receiver@entry=0x8c16d0, e=e@entry=0x7fffffffd680) at kernel/qapplication.cpp:4562 #14 0x00007ffff7323f6d in QApplication::notify (this=0x7fffffffdb20, receiver=0x8c16d0, e=0x7fffffffd680) at kernel/qapplication.cpp:4423 #15 0x00007ffff6da0fed in QCoreApplication::notifyInternal (this=0x7fffffffdb20, receiver=receiver@entry=0x8c16d0, event=event@entry=0x7fffffffd680) at kernel/qcoreapplication.cpp:949 #16 0x00007ffff736319c in sendEvent (event=0x7fffffffd680, receiver=0x8c16d0) at ../../src/corelib/kernel/qcoreapplication.h:231 #17 QWidget::ensurePolished (this=this@entry=0x8c16d0) at kernel/qwidget.cpp:9726 #18 0x00007ffff7367206 in QWidget::setVisible (this=0x8c16d0, visible=<optimized out>) at kernel/qwidget.cpp:7728 #19 0x0000000000421dc7 in main (argc=1, argv=<optimized out>) at /usr/src/debug/sci-chemistry/avogadro-1.1.0/avogadro-1.1.0/avogadro/src/main.cpp:250 (gdb) c Continuing. [Thread 0x7fffd36da700 (LWP 15745) exited] [Thread 0x7fffd8a3c700 (LWP 15744) exited] Program terminated with signal SIGSEGV, Segmentation fault. The program no longer exists. (gdb) q
$ emerge --info =sci-chemistry/avogadro-1.1.0 Portage 2.1.13.7 (default/linux/amd64/13.0/desktop, gcc-4.7.3, glibc-2.17, 3.10.5-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.10.5-gentoo-x86_64-AMD_Athlon-tm-_II_X4_640_Processor-with-gentoo-2.2 KiB Mem: 8180800 total, 1178420 free KiB Swap: 2097148 total, 2097148 free Timestamp of tree: Mon, 12 Aug 2013 06:15:01 +0000 ld GNU ld (GNU Binutils) 2.23.1 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.2_p45 dev-java/java-config: 2.2.0 dev-lang/python: 2.7.5-r1, 3.3.2-r1 dev-util/cmake: 2.8.11.1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6, 1.13.4, 1.14 sys-devel/binutils: 2.23.1 sys-devel/gcc: 4.7.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.9 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo science proaudio x-local lilrc ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=amdfam10 -O2 -fomit-frame-pointer -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=amdfam10 -O2 -fomit-frame-pointer -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildsyspkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news noinfo parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.df.lth.se/pub/gentoo/ rsync://ftp.df.lth.se/pub/gentoo/ http://mirror.mdfnet.se/gentoo" LANG="sv_SE.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/home/kalle/overlays/science /home/kalle/overlays/proaudio /home/kalle/overlays/local /home/kalle/overlays/lilrc" SYNC="rsync://rsync.se.gentoo.org/gentoo-portage" USE="3dnow 3dnowext X a52 aac acl amd64 aspell avahi bluetooth cairo caps cd cdda cddb cdr consolekit cracklib cups curl dbus devhelp dssi dvd dvdr exif ffmpeg fftw filecaps flac fltk gallium gif gimp git glib gmp gnutls gstreamer gtk gtk2 gtkspell gtkstyle gudev hwdb jack javascript jit joystick jpeg keymap kmod ladspa lame libgig libnotify libsamplerate lv2 mad mmx mmxext mp3 mpeg multilib nls nptl ogg opengl openmp openrc orc pam pdf png policykit pulseaudio qt4 readline spell sse sse2 sse3 sse4_1 ssl startup-notification subversion svg svn theora threads thunar tiff truetype udev unicode usb v4l vorbis webgl webkit x264 xcomposite xfce xml xorg xscreensaver zlib" ABI_X86="64" ALSA_CARDS="ca0106 hda-intel" CURL_SSL="gnutls" ELIBC="glibc" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev" KERNEL="linux" LINGUAS="en en_GB sv sv_SE" PYTHON_SINGLE_TARGET="python3_3" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="radeon" XFCE_PLUGINS="trash" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sci-chemistry/avogadro-1.1.0 was built with the following: USE="sse2 -glsl -python -test" CFLAGS="-O2 -march=amdfam10 -pipe -ggdb" CXXFLAGS="-O2 -march=amdfam10 -pipe -ggdb"
Created attachment 356374 [details] Compressed build log
I can no longer reproduce this.
