Bug 407331 – sci-biology/vienna-rna-1.8.5 - RNA_wrap.c:2169: error: expected ';', ',' or ')' before numeric constant

• Status: RESOLVED OBSOLETE
• Product: Gentoo Linux

[Description Brent Baude (RETIRED) 2012-03-07 20:40:14 UTC]

vienna-rna-1.8.5 fails to compile on ppc64-32UL.

Reproducible: Always

[Comment 1 Brent Baude (RETIRED) 2012-03-07 20:41:27 UTC]

emerge --info as follows:

Portage 2.1.10.44 (default/linux/powerpc/ppc64/10.0/32bit-userland/desktop, gcc-4.4.6, glibc-2.13-r4, 2.6.32.19-0.3-default ppc64)
=================================================================
System uname: Linux-2.6.32.19-0.3-default-ppc64-POWER7_-architected-,_altivec_supported-with-gentoo-2.0.3
Timestamp of tree: Wed, 07 Mar 2012 17:30:01 +0000
ccache version 3.1.6 [disabled]
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.1.4-r3, 3.2.2
dev-util/ccache:          3.1.6
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.3.6-r1, 4.4.6-r1, 4.5.3-r2
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo
ACCEPT_KEYWORDS="ppc"
ACCEPT_LICENSE="* -@EULA IBM-J1.6 IBM-J1.5"
CBUILD="powerpc-unknown-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="powerpc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-2.2/conf /var/bind /var/lib/neatx/home /var/spool/torque /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j20"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl alsa apache2 berkdb bluetooth branding bzip2 cairo cdda cdr cjk cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran ftp gcc64 gd gdbm gdu gif gnome gpm gtk iconv ipv6 jpeg kpathsea lcms ldap libnotify mad mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf png policykit ppc ppds pppd qt3support qt4 readline sdl session spell ssl startup-notification svg sysfs tcpd tiff truetype udev unicode usb video vorbis xcb xetex xml xorg xulrunner xv xvfb xvid zlib" ALSA_CARDS="aoa aoa-fabric-layout aoa-onyx aoa-soundbus aoa-soundbus-i2s aoa-tas aoa-toonie powermac usb-audio via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint mach64 mga nv r128 radeon savage tdfx trident dummy nouveau v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 2 Brent Baude (RETIRED) 2012-03-07 20:42:13 UTC]

Created attachment 304561 [details]
build log failure

[Comment 3 Jeroen Roovers (RETIRED) 2012-03-07 20:43:18 UTC]

Please attach the entire build log to this bug report.

[Comment 4 Justin Lecher (RETIRED) 2012-03-08 07:39:49 UTC]

could please test the stable version? I can't see any change in the code, that it should happen now and not before.