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Bug 114095 - An ebuild for the science program: Seq-Gen
Summary: An ebuild for the science program: Seq-Gen
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Default Assignee for New Packages
URL:
Whiteboard: sunrise suggested
Keywords: EBUILD
Depends on:
Blocks:
 
Reported: 2005-11-30 19:02 UTC by Brady Catherman
Modified: 2018-06-07 18:25 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
The ebuild. (seq-gen-1.3.2.ebuild,1.38 KB, text/plain)
2005-11-30 19:03 UTC, Brady Catherman
Details

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Description Brady Catherman 2005-11-30 19:02:55 UTC
I have no clue what this program does. I was asked to install it on our cluster
so I went ahead and made an ebuild for it.

This package has a fetch restriction.

(From the packages webpage)
Seq-Gen is a program that will simulate the evolution of nucleotide or amino
acid sequences along a phylogeny, using common models of the substitution
process. A range of models of molecular evolution are implemented including the
general reversible model. State frequencies and other parameters of the model
may be given and site-specific rate heterogeneity may also be incorporated in a
number of ways. Any number of trees may be read in and the program will produce
any number of data sets for each tree. Thus large sets of replicate simulations
can be easily created. It has been designed to be a general purpose simulator
that incorporates most of the commonly used (and computationally tractable)
models of molecular sequence evolution.
Comment 1 Brady Catherman 2005-11-30 19:03:39 UTC
Created attachment 73873 [details]
The ebuild.
Comment 2 Jeremy Olexa (darkside) (RETIRED) archtester gentoo-dev Security 2009-03-01 01:54:19 UTC
(this is an automated message based on filtering criteria that matched this bug)
'EBUILD' is in the KEYWORDS which should mean that there is a ebuild attached 
to this bug.
This bug is assigned to maintainer-wanted which means that it is not in the 
main tree.
Heuristics show that no Gentoo developer has commented on your ebuild.

Hello, The Gentoo Team would like to firstly thank you for your ebuild 
submission. We also apologize for not being able to accommodate you in a timely
manner. There are simply too many new packages.

Allow me to use this opportunity to introduce you to Gentoo Sunrise. The 
sunrise overlay[1] is a overlay for Gentoo which we allow trusted users to 
commit to and all users can have ebuilds reviewed by Gentoo devs for entry 
into the overlay. So, the sunrise team is suggesting that you look into this 
and submit your ebuild to the overlay where even *you* can commit to. =)

Because this is a mass message, we are also asking you to be patient with us. 
We anticipate a large number of requests in a short time. 

Thanks,
On behalf of the Gentoo Sunrise Team,
Jeremy.

[1]: http://www.gentoo.org/proj/en/sunrise/
[2]: http://overlays.gentoo.org/proj/sunrise/wiki/SunriseFaq