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(This was originally reported as bug 69696, but it won't let me reopen that one.) The lack of providing virtual/mta seems to have more to do with how the ebuild is setup than actually the functionality of msmtp. That is, it seems that some of the other mtas in mail-mta provide virtual/mta only if the mailwrapper use flag is enabled. And in any case, it just appears to be providing a symlink for sendmail. In that case, then the ebuild should probably be reworked so msmtp works like the others.
Actually, the reason that msmtp doesn't PROVIDE virtual/mta is that msmtp doesn't provide the /usr/sbin/sendmail interface that many programs (such as cron) expect. Thus, msmtp cannot be used as a dependency for those programs. There's no reason that one couldn't modify msmtp to behave like ssmtp when run via a /usr/sbin/sendmail symlink, but that's not really what msmtp was designed for.
See http://msmtp.sourceforge.net/ It seems that in version msmtp 1.3.0 and newer, sendmail interface options were added.
Interesting. Okay, reopening. All yours, slarti!
Fixed in CVS, thanks for the report.