'genkernel' fails with: root@leopard:/usr/src/linux(148)# time genkernel --oldconfig all * Gentoo Linux Genkernel; Version 3.4.45 * Running with options: --oldconfig all * Using genkernel.conf from /etc/genkernel.conf * Sourcing arch-specific config.sh from /usr/share/genkernel/arch/x86_64/config.sh .. * Sourcing arch-specific modules_load from /usr/share/genkernel/arch/x86_64/modules_load .. * Linux Kernel 3.6.6-gentoo for x86_64... * .. with config file /etc/kernels/kernel-config-x86_64-3.6.6-gentoo * kernel: --mrproper is disabled; not running 'make mrproper'. * >> Running oldconfig... * kernel: --clean is disabled; not running 'make clean'. * >> Compiling 3.6.6-gentoo bzImage... * >> Installing firmware ('make firmware_install') due to CONFIG_FIRMWARE_IN_KERNEL != y... * >> Compiling 3.6.6-gentoo modules... * >> Generating module dependency data... * Copying config for successful build to /etc/kernels/kernel-config-x86_64-3.6.6-gentoo * busybox: >> Using cache * initramfs: >> Initializing... * >> Appending base_layout cpio data... * >> Appending auxilary cpio data... * >> Copying keymaps * >> Appending busybox cpio data... * >> Appending lvm cpio data... * LVM: Adding support (compiling binaries)... * lvm: >> Using cache * >> Appending mdadm cpio data... * MDADM: Adding support (compiling binaries)... * MDADM: Using cache * >> Appending modules cpio data... * >> Appending blkid cpio data... * ERROR: Binary /sbin/blkid is linked to missing libraries and may need to be re-built * * -- Grepping log... -- * * Running with options: --oldconfig all * Using genkernel.conf from /etc/genkernel.conf * Sourcing arch-specific config.sh from /usr/share/genkernel/arch/x86_64/config.sh .. * Sourcing arch-specific modules_load from /usr/share/genkernel/arch/x86_64/modules_load .. * * ERROR: Binary /sbin/blkid is linked to missing libraries and may need to be re-built * Rebuilding of sys-apps/util-linux-2.22.1 does not change anything. root@leopard:/usr/src/linux(154)# emerge --info Portage 2.1.11.31 (default/linux/amd64/10.0, gcc-4.6.3, glibc-2.16.0, 3.6.1-gentoo x86_64) ================================================================= System uname: Linux-3.6.1-gentoo-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.2 Timestamp of tree: Tue, 06 Nov 2012 09:00:01 +0000 ld GNU ld (GNU Binutils) 2.23 app-shells/bash: 4.2_p39 dev-java/java-config: 2.1.12 dev-lang/python: 2.7.3-r2, 3.2.3-r1 dev-util/cmake: 2.8.9-r1 dev-util/pkgconfig: 0.27.1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.4 sys-apps/sandbox: 2.6 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.4 sys-devel/binutils: 2.23 sys-devel/gcc: 4.6.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.6 (virtual/os-headers) sys-libs/glibc: 2.16.0 Repositories: gentoo lisp science sunrise bicatali x11 sage-on-gentoo arcon ibormuth java-overlay x-portage x-cpan x-g-octave ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-10.3 cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -ggdb" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -ggdb" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news noclean nostrip parallel-fetch protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ " LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de fr ru" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/lisp /var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/bicatali /var/lib/layman/x11 /var/lib/layman/sage-on-gentoo /var/lib/layman/arcon /var/lib/layman/ibormuth /var/lib/layman/java-overlay /usr/local/portage /var/lib/cpan /var/lib/g-octave" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boo boost bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit cracklib crypt css cuda cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpx fts3 fuse g3dvl gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gstreamer gtk gtk3 gudev guile harness hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kqemu kvm ladspa lame lapack latex lcms ldap lensfun libffi libkms libnotify libsamplerate live lm_sensors lua lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nntp nptl nsplugin ntfs ntp numpy nvidia obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp overview pam pcre pda pdf perl plotutils plugins png podcast policykit portaudio posix postgres postscript ppds pppd preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets soup sox speex spell sql sqlite sse sse2 sse4 ssl subtitles subversion sudo suexec svg svm swig szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus threads thunderbird tidy tiff tk tools truetype udev unicode usb userlocales utempter vaapi vdpau video virtualbox visio vorbis wav webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Please attach the entire `genkernel --oldconfig all' output to this bug report.
root@leopard:/usr/src(6)# genkernel --oldconfig all * Gentoo Linux Genkernel; Version 3.4.45 * Running with options: --oldconfig all * Using genkernel.conf from /etc/genkernel.conf * Sourcing arch-specific config.sh from /usr/share/genkernel/arch/x86_64/config.sh .. * Sourcing arch-specific modules_load from /usr/share/genkernel/arch/x86_64/modules_load .. * Linux Kernel 3.6.6-gentoo for x86_64... * .. with config file /etc/kernels/kernel-config-x86_64-3.6.6-gentoo * kernel: --mrproper is disabled; not running 'make mrproper'. * >> Running oldconfig... * kernel: --clean is disabled; not running 'make clean'. * >> Compiling 3.6.6-gentoo bzImage... * >> Installing firmware ('make firmware_install') due to CONFIG_FIRMWARE_IN_KERNEL != y... * >> Compiling 3.6.6-gentoo modules... * >> Generating module dependency data... * Copying config for successful build to /etc/kernels/kernel-config-x86_64-3.6.6-gentoo * busybox: >> Using cache * initramfs: >> Initializing... * >> Appending base_layout cpio data... * >> Appending auxilary cpio data... * >> Copying keymaps * >> Appending busybox cpio data... * >> Appending lvm cpio data... * LVM: Adding support (compiling binaries)... * lvm: >> Using cache * >> Appending mdadm cpio data... * MDADM: Adding support (compiling binaries)... * MDADM: Using cache * >> Appending modules cpio data... * >> Appending blkid cpio data... * ERROR: Binary /sbin/blkid is linked to missing libraries and may need to be re-built * * -- Grepping log... -- * * Running with options: --oldconfig all * Using genkernel.conf from /etc/genkernel.conf * Sourcing arch-specific config.sh from /usr/share/genkernel/arch/x86_64/config.sh .. * Sourcing arch-specific modules_load from /usr/share/genkernel/arch/x86_64/modules_load .. * * ERROR: Binary /sbin/blkid is linked to missing libraries and may need to be re-built * * -- End log... -- * * Please consult /var/log/genkernel.log for more information and any * errors that were reported above. * * Report any genkernel bugs to bugs.gentoo.org and * assign your bug to genkernel@gentoo.org. Please include * as much information as you can in your bug report; attaching * /var/log/genkernel.log so that your issue can be dealt with effectively. * * Please do *not* report compilation failures as genkernel bugs! * root@leopard:/usr/src(7)#
Does a revdep-rebuild fix this?
Revdep-rebuild wants only to reermerge gnome-phone-manager and syncevolution: root@leopard:/usr/src(7)# revdep-rebuild * Configuring search environment for revdep-rebuild ... * All prepared. Starting rebuild emerge --complete-graph=y --oneshot app-mobilephone/gnome-phone-manager:0 app-pda/syncevolution:0 .......... and I reemerged already util-linux, which contains blkid. If I call blkid from the command line, I do not have any problem: root@leopard:/usr/src(8)# blkid /dev/sda1 /dev/sda1: UUID="246ca23e-b73e-ea78-cb20-1669f728008a" TYPE="linux_raid_member" root@leopard:/usr/src(9)# type blkid blkid is hashed (/sbin/blkid) root@leopard:/usr/src(10)# ll /sbin/blkid -rwxr-xr-x 1 root root 112916 Nov 6 12:07 /sbin/blkid* root@leopard:/usr/src(11)# ldd /sbin/blkid linux-vdso.so.1 (0x00007fff0755d000) libblkid.so.1 => /lib64/libblkid.so.1 (0x00007f18b739e000) libc.so.6 => /lib64/libc.so.6 (0x00007f18b6ff6000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f18b6df1000) /lib64/ld-linux-x86-64.so.2 (0x00007f18b75d2000)
Same issue here. I downgraded genkernel to genkernel-3.4.44.2 but the problem remains. The source is to be found in /usr/share/genkernel/gen_initramfs.sh in the copy_binaries function. This function calls the lddtree binary in order to check for binary sanity. Where ldd succeeds : $ ldd /sbin/blkid linux-vdso.so.1 (0x00007fff8a588000) libblkid.so.1 => /lib64/libblkid.so.1 (0x00007fd708f82000) libc.so.6 => /lib64/libc.so.6 (0x00007fd708bdd000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007fd7089d8000) /lib64/ld-linux-x86-64.so.2 (0x00007fd7091a9000) lddtree just fails : $ lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => not found lddtree is part of the pax-utils package that has been updated on November the 5th, just the day genkernel got bumped.
And if I run "lddtree -x /sbin/blkid" in order to get debug traces, I can see that every successfully resolved dependency shows something similar to this : + pe=/lib64/libuuid.so.1 + [[ -e /lib64/libuuid.so.1 ]] ++ elf_specs /lib64/libuuid.so.1 ++ scanelf -BF '#F%a %M %D %I' /lib64/libuuid.so.1 + [[ EM_X86_64 ELFCLASS64 LE NONE == \E\M\_\X\8\6\_\6\4\ \E\L\F\C\L\A\S\S\6\4\ \L\E\ \N\O\N\E ]] + _find_elf=/lib64/libuuid.so.1 + return 0 expect libc.so.6 which shows this : + pe=/lib64/libc.so.6 + [[ -e /lib64/libc.so.6 ]] ++ elf_specs /lib64/libc.so.6 ++ scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 + [[ EM_X86_64 ELFCLASS64 LE LINUX == \E\M\_\X\8\6\_\6\4\ \E\L\F\C\L\A\S\S\6\4\ \L\E\ \N\O\N\E ]] + for path in '"$@"' + pe=/usr/lib64/libc.so.6 So basically the issue boils down to this difference : $ scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE LINUX $ scanelf -BF '#F%a %M %D %I' /lib64/libuuid.so.1 EM_X86_64 ELFCLASS64 LE NONE
I downgraded pax-utils to 0.4 and now genkernel-3.4.45 works fine.
The interesting is that at "leopard" lddtree from pax-utils-0.5 does not find libc.so.6, while at "moose" lddtree from pax-utils-0.5 find it without problems: root@leopard:/usr/src/linux(23)# type lddtree lddtree is hashed (/usr/bin/lddtree) root@leopard:/usr/src/linux(24)# qfile -v /usr/bin/lddtree app-misc/pax-utils-0.5 (/usr/bin/lddtree) root@leopard:/usr/src/linux(25)# lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => not found root@leopard:/usr/src/linux(29)# ll -d /lib64/libc* -rwxr-xr-x 1 root root 9605028 Nov 1 04:23 /lib64/libc-2.16.so* lrwxrwxrwx 1 root root 12 Nov 1 04:23 /lib64/libc.so.6 -> libc-2.16.so* lrwxrwxrwx 1 root root 14 Apr 17 2012 /lib64/libcap.so.2 -> libcap.so.2.22* -rwxr-xr-x 1 root root 22888 Apr 17 2012 /lib64/libcap.so.2.22* -rwxr-xr-x 1 root root 269844 Nov 1 04:23 /lib64/libcidn-2.16.so* lrwxrwxrwx 1 root root 15 Nov 1 04:23 /lib64/libcidn.so.1 -> libcidn-2.16.so* lrwxrwxrwx 1 root root 17 Oct 8 04:38 /lib64/libcom_err.so.2 -> libcom_err.so.2.1* -rwxr-xr-x 1 root root 14640 Oct 8 04:38 /lib64/libcom_err.so.2.1* lrwxrwxrwx 1 root root 17 Oct 22 04:17 /lib64/libcrack.so.2 -> libcrack.so.2.8.1* -rwxr-xr-x 1 root root 91746 Oct 22 04:17 /lib64/libcrack.so.2.8.1* -rwxr-xr-x 1 root root 119979 Nov 1 04:23 /lib64/libcrypt-2.16.so* lrwxrwxrwx 1 root root 16 Nov 1 04:23 /lib64/libcrypt.so.1 -> libcrypt-2.16.so* root@moose:/usr/src/linux(42)# type lddtree lddtree is hashed (/usr/bin/lddtree) root@moose:/usr/src/linux(43)# qfile -v /usr/bin/lddtree app-misc/pax-utils-0.5 (/usr/bin/lddtree) root@moose:/usr/src/linux(44)# lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => /lib64/libc.so.6 root@moose:/usr/src/linux(47)# ll -d /lib64/libc* -rwxr-xr-x 1 root root 1724664 Nov 1 04:39 /lib64/libc-2.16.so* lrwxrwxrwx 1 root root 14 Apr 6 2012 /lib64/libcap.so.2 -> libcap.so.2.22* -rwxr-xr-x 1 root root 22888 Apr 6 2012 /lib64/libcap.so.2.22* -rwxr-xr-x 1 root root 190688 Nov 1 04:39 /lib64/libcidn-2.16.so* lrwxrwxrwx 1 root root 15 Nov 1 04:39 /lib64/libcidn.so.1 -> libcidn-2.16.so* lrwxrwxrwx 1 root root 17 Oct 8 04:49 /lib64/libcom_err.so.2 -> libcom_err.so.2.1* -rwxr-xr-x 1 root root 14640 Oct 8 04:49 /lib64/libcom_err.so.2.1* lrwxrwxrwx 1 root root 17 Oct 22 04:28 /lib64/libcrack.so.2 -> libcrack.so.2.8.1* -rwxr-xr-x 1 root root 43328 Oct 22 04:28 /lib64/libcrack.so.2.8.1* -rwxr-xr-x 1 root root 34968 Nov 1 04:39 /lib64/libcrypt-2.16.so* lrwxrwxrwx 1 root root 16 Nov 1 04:39 /lib64/libcrypt.so.1 -> libcrypt-2.16.so* lrwxrwxrwx 1 root root 12 Nov 1 04:39 /lib64/libc.so.6 -> libc-2.16.so*
Juergen, can you run this on both your machines to see if the output differs : $ scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6
The output of scanelf differs as well: root@leopard:/root(55)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE LINUX root@moose:/root(1)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE NONE
(In reply to comment #6) try to re-emerge glibc. i vaguely recall EI_OSABI changing at some point, but i'd have to dig things up to find out when/why.
(In reply to comment #11) regardless of that, i just have lddtree normalize LINUX to NONE now http://sources.gentoo.org/gentoo-projects/pax-utils/lddtree.sh?r1=1.13&r2=1.14
Hi Mike, thank you for looking at this. That's weird. Initially I had binutils-2.22-r1 and glibc-2.15-r3 installed. I tried the following with the same result : - bumping binutils to 2.23 et recompiling glibc - bumping glibc to 2.16 - bumping binutils to 2.23 and glibc to 2.16 - recompiled the system target I'm currently recompiling world (safety measure linked with the glibc-2.16 bump), I'm afraid it's not going to change anything. I've googled a bit about this osabi stuf, but found nothing really useful. Do you plan to add your patch against pax-utils-0.5 in the portage tree or wait for it to be included in 0.6 ?
Juergen, would you try running `env LC_ALL=C lddtree /sbin/blkid` and telling us what that says? Also, as a side note, the following commit switched to using the system blkid from one we compiled ourselves: http://git.overlays.gentoo.org/gitweb/?p=proj/genkernel.git;a=commit;f=gen_initramfs.sh;h=5153192ca2109768336dfa5f891ec6f73e29001a blkid is already provided by busybox, but it does not provide all of the information that the system blkid does. It is not clear to me that we actually need that information though. I have written a commit that switches to the busybox blkid and it works fine on my system, but I have not committed it to master: http://git.overlays.gentoo.org/gitweb/?p=proj/genkernel.git;a=commit;h=255b7ca420e889260e5a8303dda7372a0424186d I am not familiar with UUID-based mounting, so we will need comments from the other genkernel developers about that change.
(In reply to comment #14) > Also, as a side note, the following commit switched to using the system > blkid from one we compiled ourselves: > > http://git.overlays.gentoo.org/gitweb/?p=proj/genkernel.git;a=commit; > f=gen_initramfs.sh;h=5153192ca2109768336dfa5f891ec6f73e29001a > > blkid is already provided by busybox, but it does not provide all of the > information that the system blkid does. It is not clear to me that we > actually need that information though. I have written a commit that switches > to the busybox blkid and it works fine on my system, but I have not > committed it to master: > > http://git.overlays.gentoo.org/gitweb/?p=proj/genkernel.git;a=commit; > h=255b7ca420e889260e5a8303dda7372a0424186d > > I am not familiar with UUID-based mounting, so we will need comments from > the other genkernel developers about that change. After speaking with robbat2, it seems that busybox's blkid does not support as many filesystems as the util-linux blkid. We would need to patch busybox before we could switch to it.
To comment 14: root@leopard:/root(3)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => not found root@leopard:/root(4)# root@moose:/root(17)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => /lib64/libc.so.6 root@moose:/root(18)#
(In reply to comment #11) I reemerged glibc, pax-utils and util-linux pn both systems, but the different output of blkid and scanelf remains: root@leopard:/usr/src/linux(74)# genlop -t glibc | tail -n 6 Mon Nov 12 16:40:04 2012 >>> sys-libs/glibc-2.16.0 merge time: 7 minutes. Tue Nov 13 17:44:41 2012 >>> sys-libs/glibc-2.16.0 merge time: 6 minutes and 48 seconds. root@leopard:/usr/src/linux(75)# genlop -t pax-utils | tail -n 6 Mon Nov 12 16:41:47 2012 >>> app-misc/pax-utils-0.5 merge time: 7 seconds. Tue Nov 13 17:37:21 2012 >>> app-misc/pax-utils-0.5 merge time: 5 seconds. root@leopard:/usr/src/linux(76)# genlop -t util-linux | tail -n 6 Tue Nov 6 12:07:12 2012 >>> sys-apps/util-linux-2.22.1 merge time: 41 seconds. Tue Nov 13 17:37:53 2012 >>> sys-apps/util-linux-2.22.1 merge time: 32 seconds. root@leopard:/usr/src/linux(77)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => not found root@leopard:/usr/src/linux(78)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE LINUX root@leopard:/usr/src/linux(79)# grep "^CFLAGS=\|^FEATURES=" /etc/make.conf CFLAGS="-march=native -O2 -ggdb" FEATURES="splitdebug noclean nostrip" root@moose:/root(34)# genlop -t glibc | tail -n 7 Thu Nov 1 04:39:37 2012 >>> sys-libs/glibc-2.16.0 merge time: 8 minutes and 53 seconds. Tue Nov 13 16:45:02 2012 >>> sys-libs/glibc-2.16.0 merge time: 8 minutes and 59 seconds. root@moose:/root(35)# genlop -t glibc | tail -n 6 Thu Nov 1 04:39:37 2012 >>> sys-libs/glibc-2.16.0 merge time: 8 minutes and 53 seconds. Tue Nov 13 16:45:02 2012 >>> sys-libs/glibc-2.16.0 merge time: 8 minutes and 59 seconds. root@moose:/root(36)# genlop -t pax-utils | tail -n 6 Mon Nov 5 19:10:30 2012 >>> app-misc/pax-utils-0.5 merge time: 8 seconds. Tue Nov 13 16:36:03 2012 >>> app-misc/pax-utils-0.5 merge time: 8 seconds. root@moose:/root(37)# genlop -t util-linux | tail -n 6 Fri Oct 12 04:33:59 2012 >>> sys-apps/util-linux-2.22.1 merge time: 57 seconds. Tue Nov 13 17:38:14 2012 >>> sys-apps/util-linux-2.22.1 merge time: 45 seconds. root@moose:/root(38)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => /lib64/libc.so.6 root@moose:/root(39)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE NONE root@moose:/root(40)# grep "^CFLAGS=\|^FEATURES=" /etc/make.conf CFLAGS="-march=native -O2 -pipe" So one difference at both systems are the debug flags, therefore I removed the debug flags at "leopard", now I get at "leopard" the same results as at "moose": root@leopard:/usr/src/linux(82)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => /lib64/libc.so.6 root@leopard:/usr/src/linux(83)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE NONE root@leopard:/usr/src/linux(84)# grep "^CFLAGS=\|^FEATURES=" /etc/make.conf CFLAGS="-march=native -O2 -pipe" and even genkernel works now.
Have the same problem here as well, but without debug flags. # scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE LINUX Downgrading to pax-utils-0.4 makes it work again, so this is a regression introduced in in pax-utils-0.5
For me this issue is resolved with pax-utils-0.6
'genkernel' fails again for me with: root@cheetahnew:/usr/src/linux(61)# time genkernel --oldconfig all ... * >> Appending blkid cpio data... * ERROR: Binary /sbin/blkid is linked to missing libraries and may need to be re-built ... 'lddtree' shows that libc.s0.6 is not found: root@cheetahnew:/usr/src/linux(64)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => not found I don't understand, why it is not found. 'ldconfig -v' finds it: root@cheetahnew:/usr/src/linux(65)# ldconfig -v | grep libc.so ldconfig: Can't stat /usr/local/lib32: No such file or directory ... ldconfig: Cannot stat /usr/lib64/libcblas.so: No such file or directory libc.so.6 -> libc-2.17.so libc.so.6 -> libc-2.17.so root@cheetahnew:/usr/src/linux(69)# ll /lib/libc.so* lrwxrwxrwx 1 root root 12 Mar 28 15:36 /lib/libc.so.6 -> libc-2.17.so* root@cheetahnew:/usr/src/linux(77)# emerge -pvD util-linux These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] sys-apps/util-linux-2.22.2 USE="cramfs crypt ncurses nls perl slang static-libs suid udev unicode -ddate -old-linux (-selinux) {-test}" 0 kB Portage 2.1.11.59 (default/linux/amd64/13.0, gcc-4.7.2, glibc-2.17, 3.8.3-gentoo-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.8.3-gentoo-r1-x86_64-Intel-R-_Core-TM-_i3-2120_CPU_@_3.30GHz-with-gentoo-2.2 KiB Mem: 7866108 total, 848336 free KiB Swap: 50331640 total, 50289012 free Timestamp of tree: Mon, 01 Apr 2013 12:30:01 +0000 ld GNU ld (GNU Binutils) 2.23.2 app-shells/bash: 4.2_p45 dev-java/java-config: 2.1.12-r1 dev-lang/python: 2.7.3-r3, 3.2.3-r2 dev-util/cmake: 2.8.10.2-r1 dev-util/pkgconfig: 0.28 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.1 sys-devel/binutils: 2.23.2 sys-devel/gcc: 4.7.2-r1 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.8 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo science sunrise lisp sabayon x-portage x-cpan x-g-octave ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/polkit-1/actions /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LC_ALL="C" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/lisp /var/lib/layman/sabayon /usr/local/portage /var/lib/cpan /var/lib/g-octave" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boo boost bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fts3 fuse g3dvl gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gstreamer gtk gtk3 gudev guile harness hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3 id3tag ide imagemagick imap inotify introspection ipod ipv6 ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kqemu kvm ladspa lame lapack latex lcms ldap lensfun libffi libkms libnotify libsamplerate live lm_sensors lua lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp overview pam pcre pda pdf perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q32 qemu qhull qt3support qt4 quicktime raw readline reiserfs reports rhythmbox rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 sse4_1 ssl ssse3 stlport subtitles subversion sudo suexec svg svm swig szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thesaurus threads thunderbird tidy tiff tk tools truetype udev udisks unicode usb userlocales utempter v4l vaapi vala vdpau video virt-network virtualbox visio vorbis vpx wav webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CURL_SSL="nss" DRACUT_MODULES="caps lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sys-apps/util-linux-2.22.2 was built with the following: USE="cramfs crypt (multilib) ncurses nls perl slang static-libs suid udev unicode -ddate -old-linux (-selinux) -test" ABI_X86="64" Any hint is appreciated. Reemerging util-linux and 'revdep-rebuild' did not help: root@cheetahnew:/usr/src/linux(76)# genlop -t util-linux | tail Mon Mar 4 12:20:50 2013 >>> sys-apps/util-linux-2.22.2 merge time: 45 seconds. Fri Mar 29 04:32:07 2013 >>> sys-apps/util-linux-2.22.2 merge time: 47 seconds. Mon Apr 1 16:45:49 2013 >>> sys-apps/util-linux-2.22.2 merge time: 48 seconds.
BTW. pax-utils-0.5 is installed and scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 shows again "EM_X86_64 ELFCLASS64 LE LINUX": root@cheetahnew:/usr/src/linux(81)# qlist -Iv pax app-misc/pax-utils-0.5 sys-apps/paxctl-0.7-r2 root@cheetahnew:/usr/src/linux(82)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE LINUX
After reemerging glibc-2.17, I get again the desired: root@cheetahnew:/usr/src/linux(84)# scanelf -BF '#F%a %M %D %I' /lib64/libc.so.6 EM_X86_64 ELFCLASS64 LE NONE root@cheetahnew:/usr/src/linux(86)# env LC_ALL=C lddtree /sbin/blkid blkid => /sbin/blkid (interpreter => /lib64/ld-linux-x86-64.so.2) libblkid.so.1 => /lib64/libblkid.so.1 libuuid.so.1 => /lib64/libuuid.so.1 libc.so.6 => /lib64/libc.so.6 and 'time genkernel --oldconfig all' works too.
(In reply to comment #19) > For me this issue is resolved with pax-utils-0.6 I seems fairly clear at this point that this is a regression in app-misc/pax-utils-0.5. I am reassigning to the pax-utils maintainers for resolution.
pax-utils-0.6 is already in the tree w/the fix. there's nothing left to do.
(In reply to comment #24) > pax-utils-0.6 is already in the tree w/the fix. there's nothing left to do. Oh yes it is! Reassign back to Genkernel maintainers and get one of them with commit-access to the portage tree to roll a new release since the git-tree already contains a fix.
(In reply to comment #25) > (In reply to comment #24) > > pax-utils-0.6 is already in the tree w/the fix. there's nothing left to do. > > Oh yes it is! > Reassign back to Genkernel maintainers and get one of them with > commit-access to the portage tree to roll a new release since the git-tree > already contains a fix. That is a fix for genkernel to work with pax-utils-0.6 so that people does not hit this bug. So it can be stabilized at the same time as pax-utils-0.6,
i really have no idea what's going on here. afaik, pax-utils-0.6 has all necessary fixes. if that's not the case, re-add us and specifically outline things.
I have committed a blocker against app-misc/pax-utils-0.5. That should resolve this issue.
(In reply to comment #28) > I have committed a blocker against app-misc/pax-utils-0.5. That should > resolve this issue. So we're not going to release a new version of genkernel so that we might have something stable at the time pax-utils-0.6 goes stable? Or at least a -r1 with a patch fixing this issue (as it already exists in genkernel git)? Instead just force the ~arch users to downgrade yet another version?
