Bug 217976 – dev-db/mysql-5.0.56 fails to compile with autoconf-2.62: db_config.h not found

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Heiko Baums 2008-04-16 16:16:17 UTC]

dev-db/mysql-5.0.56 fails to compile with this error message:

make[3]: Entering directory `/var/tmp/portage/dev-db/mysql-5.0.56/work/mysql/bdb/build_unix'
/bin/sh ./libtool --mode=compile i686-pc-linux-gnu-gcc -c -I. -I../../././bdb/dist/.. -I../../././bdb/dist/../dbinc  -D_GNU_SOURCE -D_REENTRANT  -DDBUG_OFF -march=athlon-xp -O2 -pipe -fomit-frame-pointer -DHAVE_ERRNO_AS_DEFINE=1   ../../././bdb/dist/../mutex/mut_pthread.c
 i686-pc-linux-gnu-gcc -c -I. -I../../././bdb/dist/.. -I../../././bdb/dist/../dbinc -D_GNU_SOURCE -D_REENTRANT -DDBUG_OFF -march=athlon-xp -O2 -pipe -fomit-frame-pointer -DHAVE_ERRNO_AS_DEFINE=1 ../../././bdb/dist/../mutex/mut_pthread.c -o mut_pthread.o
../../././bdb/dist/../mutex/mut_pthread.c:8:23: error: db_config.h: No such file or directory
../../././bdb/dist/../mutex/mut_pthread.c:21:20: error: db_int.h: No such file or directory
../../././bdb/dist/../mutex/mut_pthread.c: In function �__db_pthread_mutex_init�:
../../././bdb/dist/../mutex/mut_pthread.c:66: error: expected declaration specifiers before �DB_ENV�
../../././bdb/dist/../mutex/mut_pthread.c:67: error: expected declaration specifiers before �DB_MUTEX�
../../././bdb/dist/../mutex/mut_pthread.c:82: error: �MUTEX_MPOOL� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:82: error: (Each undeclared identifier is reported only once
../../././bdb/dist/../mutex/mut_pthread.c:82: error: for each function it appears in.)
../../././bdb/dist/../mutex/mut_pthread.c:83: error: invalid type argument of �unary *�
../../././bdb/dist/../mutex/mut_pthread.c:83: warning: passing argument 1 of �memset� makes pointer from integer without a cast
../../././bdb/dist/../mutex/mut_pthread.c:94: error: �MUTEX_THREAD� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:94: error: �DB_ENV_PRIVATE� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:95: error: �DB_ENV_THREAD� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:96: error: �MUTEX_IGNORE� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:187: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:192: error: �MUTEX_INITED� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c: In function �__db_pthread_mutex_lock�:
../../././bdb/dist/../mutex/mut_pthread.c:208: error: expected declaration specifiers before �DB_ENV�
../../././bdb/dist/../mutex/mut_pthread.c:209: error: expected declaration specifiers before �DB_MUTEX�
../../././bdb/dist/../mutex/mut_pthread.c:214: error: �DB_ENV_NOLOCKING� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:214: error: �MUTEX_IGNORE� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:218: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:219: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:222: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:225: error: �MUTEX_SELF_BLOCK� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:226: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:227: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:227: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:238: error: �EINTR� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:242: error: �ETIMEDOUT� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:243: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:249: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:251: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:256: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:269: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:270: error: �EFAULT� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:274: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:275: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:277: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:278: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:278: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:280: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:290: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c: In function �__db_pthread_mutex_unlock�:
../../././bdb/dist/../mutex/mut_pthread.c:307: error: expected declaration specifiers before �DB_ENV�
../../././bdb/dist/../mutex/mut_pthread.c:308: error: expected declaration specifiers before �DB_MUTEX�
../../././bdb/dist/../mutex/mut_pthread.c:312: error: �DB_ENV_NOLOCKING� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:312: error: �MUTEX_IGNORE� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:320: error: �MUTEX_SELF_BLOCK� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:321: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:324: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:326: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:330: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:335: error: invalid type argument of �->�
../../././bdb/dist/../mutex/mut_pthread.c:336: error: �EFAULT� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c: In function �__db_pthread_mutex_destroy�:
../../././bdb/dist/../mutex/mut_pthread.c:351: error: expected declaration specifiers before �DB_MUTEX�
../../././bdb/dist/../mutex/mut_pthread.c:355: error: �MUTEX_IGNORE� undeclared (first use in this function)
../../././bdb/dist/../mutex/mut_pthread.c:358: error: invalid type argument of �->�
make[3]: *** [mut_pthread.o] Error 1
make[3]: Leaving directory `/var/tmp/portage/dev-db/mysql-5.0.56/work/mysql/bdb/build_unix'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/var/tmp/portage/dev-db/mysql-5.0.56/work/mysql/bdb'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/dev-db/mysql-5.0.56/work/mysql'
make: *** [all] Error 2
 *
 * ERROR: dev-db/mysql-5.0.56 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_compile
 *             environment, line 3542:  Called mysql_src_compile
 *             environment, line 3146:  Called die
 * The specific snippet of code:
 *       emake || die "emake failed";
 *  The die message:
 *   emake failed
 *
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/dev-db/mysql-5.0.56/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-db/mysql-5.0.56/temp/environment'.
 *


emerge --info:

Portage 2.1.5_rc4 (default-linux/x86/2007.0/desktop, gcc-4.1.2, glibc-2.7-r1, 2.6.24-gentoo-r5 i686)
=================================================================
System uname: 2.6.24-gentoo-r5 i686 AMD Athlon(tm) XP 1600+
Timestamp of tree: Wed, 16 Apr 2008 14:00:03 +0000
app-shells/bash:     3.2_p33
dev-java/java-config: 1.3.7, 2.1.5
dev-lang/python:     2.5.1-r5
sys-apps/baselayout: 2.0.0
sys-apps/openrc:     0.2.2
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.62
sys-devel/automake:  1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.24
ACCEPT_KEYWORDS="x86 ~x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=athlon-xp -O2 -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/applications/kde /usr/kde/3.5/share/config /usr/kde/3.5/share/services/searchproviders /usr/kde/3.5/shutdown /usr/share/applications /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-march=athlon-xp -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/"
LANG="de_DE.UTF-8"
LDFLAGS=""
LINGUAS="de"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/sunrise /usr/portage/local/private"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X a52 aac aalib accessibility acl aften alsa apache2 apm arts asf audiofile authfile avi berkdb bluetooth bzip2 cairo caps cdda cddb cdparanoia cdr chardet clamav cli cracklib crypt css ctype cups curl d dbus dga divx dri dv dvb dvd dvdnav dvdr dvdread eds emboss encode espeak expat extrafilters fam fame fbcon fbcondecor festival ffmpeg firefox flac fltk fontconfig foomaticdb fortran ftp gcj gd gdbm gif gimp glib glitz gmedia gmp gnutls gpm graphviz gs gstreamer gtk gtkhtml gucharmap hddtemp iconv idn ilbc imagemagick imlib inkjar ipv6 irmc isdnlog jack jack-tmpfs jackmidi jce jpeg kde ladspa lame lcms libffi libnotify libsamplerate lirc live lm_sensors logrotate loop-aes lzo mad mbox mbrola md5sum midi mikmod mjpeg mmx mmxext mng modplug motif mozilla mp2 mp3 mp4 mpeg mplayer mudflap musepack musicbrainz mysql mysqli nas ncurses network nls nptl nptlonly nsplugin objc objc++ objc-gc offensive ofx ogg opengl openmp osc oss pam pcre pdf perl php plugin png portaudio ppds pppd print pulseaudio python qt3 qt3support qt4 quicktime quotes rar readline real realmedia reflection rtc rtsp scanner sdl session shout sndfile speex spell spl sqlite sse ssl svg tcl tcltk tcpd tetex themes theora threads threadsafe tidy tiff tk tokenizer tools truetype unicode usb utempter v4l v4l2 vcd vdr vidix visualization vlm vorbis win32codecs wma wmf wmp x264 x86 xcomposite xine xiph xml xorg xpm xv xvid xvmc yv12 zip zlib" ALSA_CARDS="ice1712" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de" LIRC_DEVICES="devinput" USERLAND="GNU" VIDEO_CARDS="nvidia v4l"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Jeroen Roovers (RETIRED) 2008-04-16 16:23:52 UTC]

What is the output of `emerge -vp =dev-db/mysql-5.0.56`?

[Comment 2 Heiko Baums 2008-04-17 00:47:11 UTC]

# emerge -vp =dev-db/mysql-5.0.56

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U ] dev-db/mysql-5.0.56 [5.0.54] USE="berkdb perl ssl -big-tables -cluster -debug -embedded -extraengine -latin1 -max-idx-128 -minimal (-selinux) -static" 27,105 kB

Total: 1 package (1 upgrade), Size of downloads: 27,105 kB

[Comment 3 SpanKY 2008-04-20 03:02:22 UTC]

please post full build logs as attachments instead of just the tail snippets.  often times the tail snippets are irrelevant.

seems to be an autoconf-2.62 bug

the important part here is from much earlier:
configure: creating ./config.status
./config.status: line 827: db_cxx.h:../../././bdb/dist/../dbinc/db_cxx.in: No such file or directory
./config.status: line 828: db_int.h:../../././bdb/dist/../dbinc/db_int.in: No such file or directory
./config.status: line 829: include.tcl:../../././bdb/dist/../test/include.tcl: No such file or directory
./config.status: line 830: db.h:../../././bdb/dist/../dbinc/db.in:../../././bdb/dist/../dbinc_auto/rpc_defs.in:../../././bdb/dist/../dbinc_auto/ext_prot.in: No such file or directory
config.status: creating Makefile
END OF BERKELEY DB CONFIGURATION

[Comment 4 SpanKY 2008-04-20 04:02:52 UTC]

mandriva seems to have a fix:
http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/autoconf/current/SOURCES/autoconf-2.62-fix-multiline-string.patch?view=log

[Comment 5 Heiko Baums 2008-04-20 16:21:53 UTC]

Created attachment 150422 [details]
build.log

[Comment 6 Fabio Coatti 2008-04-20 16:45:52 UTC]

(In reply to comment #4)
> mandriva seems to have a fix:
> http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/autoconf/current/SOURCES/autoconf-2.62-fix-multiline-string.patch?view=log
> 

Just tested it: it fixes the issue.

[Comment 7 Dan Coats 2008-04-22 14:15:32 UTC]

same here.. Is there still a need of more info?

[Comment 8 SpanKY 2008-04-22 19:07:31 UTC]

no ... we're waiting for autoconf to find out the right fix and once they merge that, i'll add it to our autoconf

[Comment 9 Massimiliano Pizzola 2008-04-23 12:48:21 UTC]

e

[Comment 10 Massimiliano Pizzola 2008-04-23 12:57:14 UTC]

Remove berkdb 
(Berkeley DB support is deprecated and will be removed in future versions!)

# /etc/portage/package.use
dev-db/mysql -berkdb 

emerge -avD dev-db/mysql
emerge --config =dev-db/mysql-5.0.56

[Comment 11 Kliakhandler Kosta 2008-04-24 09:14:15 UTC]

(In reply to comment #10)
> Remove berkdb 
> (Berkeley DB support is deprecated and will be removed in future versions!)
> 
> # /etc/portage/package.use
> dev-db/mysql -berkdb 
> 
> emerge -avD dev-db/mysql
> emerge --config =dev-db/mysql-5.0.56
> 

I can confirm that this happens with mysql-5.0.54 as well, and that USE="-berkdb" is a working workaround.

[Comment 12 SpanKY 2008-06-29 23:10:34 UTC]

autoconf-2.62-r1 should fix things for you ... but it isnt the final/correct fix, so we'll leave the bug open

[Comment 13 Rafał Mużyło 2008-08-17 12:59:21 UTC]

Well, in case you care:
recently autoconf's git got following fix for this problem
http://git.savannah.gnu.org/gitweb/?p=autoconf.git;a=commit;h=22efb81e0aaad363d4b0f9fb6cfef80aa6e46f85

[Comment 14 SpanKY 2008-09-21 06:20:17 UTC]

should be fixed with autoconf-2.63 in the tree