Bugzilla Bug 171354

sci-libs/lapack-atlas-3.7.24-r2 fails to emerge during the last stage of
compilation. I get the following:

/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/../../../../x86_64-pc-linux-gnu/bin/ld:
.libs/cgesv.o: relocation R_X86_64_32 against `a local symbol' can not be used
when making a shared object; recompile with -fPIC
.libs/cgesv.o: could not read symbols: Bad value
collect2: ld returned 1 exit status

!!! ERROR: sci-libs/lapack-atlas-3.7.24-r2 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_compile
  ebuild.sh, line 971:   Called qa_call 'src_compile'
  environment, line 3976:   Called src_compile
  lapack-atlas-3.7.24-r2.ebuild, line 140:   Called die

!!! Failed to create liblapack.la
!!! If you need support, post the topmost build error, and the call stack if
relevant.
!!! A complete build log is located at
'/data1/portage/sci-libs/lapack-atlas-3.7.24-r2/temp/build.log'.

Reproducible: Always




emerge --info

Portage 2.1.2.2 (default-linux/amd64/2006.0, gcc-4.1.2, glibc-2.5-r1,
2.6.20-gentoo-r3-galenos x86_64)
=================================================================
System uname: 2.6.20-gentoo-r3-galenos x86_64 AMD Athlon(tm) 64 X2 Dual Core
Processor 4200+
Gentoo Base System version 1.12.9
Timestamp of tree: Sun, 18 Mar 2007 13:50:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.31-r5
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.15-r1
sys-devel/libtool:   1.5.23b
virtual/os-headers:  2.6.20-r2
ACCEPT_KEYWORDS="amd64 ~amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=athlon64 -msse3"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/lib/X11/xdm /usr/lib/fax /usr/share/X11/xkb
/usr/share/config /var/bind /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/java-config/vms/ /etc/php/apache1-php5/ext-active/
/etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/
/etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=athlon64 -msse3"
DISTDIR="/data1/distfiles"
FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox
sfperms strict"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages
--filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/data1"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=" "
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X Xaw3d a52 aac aalib acl acpi alsa amd64 ansi apache2 apm arts athena
audiofile bash-completion bcmath berkdb bitmap-fonts blas bzip2 cairo calendar
caps cblas ccache cdparanoia cdr cdrom cgi cli clisp cracklib crypt css ctype
cups curl cyrus dbus dga directfb doc dri dv dvb dvd dvdr dvdread eds emboss
encode exif expat fbcon ffmpeg fftw firefox font-server foomaticdb fortran ftp
gb gd gdbm gif glitz glut gnome gnutls gphoto2 gpm gs gstreamer gtk gtk2 guile
hal iconv idn imagemagick imlib ipppd ipv6 isdnlog java javascript jpeg kde
leim libcaca lm_sensors lzw lzw-tiff mad maildir matroska matrox mbox mcal
mhash midi mikmod mime mozcalendar mozilla mp3 mpeg mule musicbrainz ncurses
nis nls nptl nptlonly nsplugin numeric ogg openct opengl pam pango pcre pdf
perl php png portaudio posix pppd python qt3 qt4 quicktime readline recode
reflection samba sasl scanner sdl session slang sndfile sockets socks5 sox
speedo speex spell spl ssl svg syslog sysvpc tcltk tcpd theora threads tiff tk
tordns truetype truetype-fonts type1-fonts unicode urandom usb userlocales vim
vim-with-x vorbis wireshark wmp xine xml xorg xosd xpm xv xvid zlib"
ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop
empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi
null plug rate route share shm softvol" ELIBC="glibc" FRITZCAPI_CARDS="fcpci"
INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de"
USERLAND="GNU" VIDEO_CARDS="mga fbdev vesa"

Created an attachment (id=113672) [details]
build.log

same here, downgrading to libtool 1.5.22 workarounded it, but unfortunately I
don't know how to fix this. It seems to be libtool going mad with the big
command line it's given as input.

I could reproduce the workaround you suggested.

probably assigned better like that

3.7.32 links fine with libtool 1.5.23b, so does the current stable.  Closing as
fixed