Bugzilla Bug 167290

running emerge system -e fails on sys-libs/db

sys-libs/db-4.3.29-r2  USE="java -bootstrap -doc -nocxx -tcl -test"


make: *** [install_docs] Error 1

!!! ERROR: sys-libs/db-4.3.29-r2 failed.
Call stack:
  ebuild.sh, line 1614:   Called dyn_install
  ebuild.sh, line 1060:   Called qa_call 'src_install'
  environment, line 4844:   Called src_install
  db-4.3.29-r2.ebuild, line 115:   Called einstall
'libdir=/var/tmp/portage/sys-libs/db-4.3.29-r2/image//usr/lib'
'strip=/var/tmp/portage/sys-libs/db-4.3.29-r2/image//bin/strip'
  ebuild.sh, line 616:   Called die

!!! einstall failed
!!! If you need support, post the topmost build error, and the call stack if
relevant.
!!! A complete build log is located at
'/var/tmp/portage/sys-libs/db-4.3.29-r2/temp/build.log'.

!!! When you file a bug report, please include the following information:
GENTOO_VM=ibm-jdk-bin-1.5  CLASSPATH="" JAVA_HOME="/opt/ibm-jdk-bin-1.5.0.3"
JAVACFLAGS="-source 1.4 -target 1.4" COMPILER=""

Portage 2.1.2-r9 (default-linux/ppc/ppc64/2006.1/32bit-userland/power5,
gcc-4.1.1, glibc-2.4-r4, 2.6.18-gentoo-r3 ppc64)
=================================================================
System uname: 2.6.18-gentoo-r3 ppc64 POWER5 (gr)
Gentoo Base System release 1.12.9
Timestamp of tree: Fri, 16 Feb 2007 06:30:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.31-r3
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r2
ACCEPT_KEYWORDS="ppc"
AUTOCLEAN="yes"
CBUILD="powerpc-unknown-linux-gnu"
CFLAGS="-mtune=power5 -mcpu=power5 -O2 -pipe -fomit-frame-pointer"
CHOST="powerpc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/init.d
/etc/java-config/vms/ /etc/man.conf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-mtune=power5 -mcpu=power5 -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig ccache distcc distlocks metadata-transfer sandbox sfperms
splitdebug strict"
GENTOO_MIRRORS="http://mirrors.acm.cs.rpi.edu/gentoo/
http://prometheus.cs.wmich.edu/gentoo/ http://mirror.espri.arizona.edu/gentoo"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl alsa amarok amr apache2 apm arts bash-completion berkdb
bitmap-fonts c++ caps chroot cli colordiff cracklib crypt cups dlloader dri dvd
dvdr dvdread eds emboss encode esd firefox foomaticdb fortran gcc64 gdbm gif
gimpprint gnome gpm gstreamer gtk hal hpn ibm iconv imap imlib isdnlog java
javascript jikes jpeg kde lcms ldap ldapsam libg++ libwww lua lzo mad midi
mikmod mjpeg mng modplug motif mozbranding mp3 mp4 mp4live mpeg mpeg2
multipleip nas ncurses network new-login nfs nls no-old-linux nptl nptlonly
nsplugin ogg opengl pam pam_chroot pam_console pam_timestamp pcre pda pdf
pear-db perl php png posix postgres ppc pppd python qt3 qt4 quicktime quotas
rdesktop readline reflection samba sdl server session slp sndfile spell spl sql
sqlite ssl stlport svg syslog tcpd threads thunderbird tiff truetype
truetype-fonts type1-fonts unicode userlocales utempter vnc vorbis wma wmf xml
xorg xprint xv xvid zlib" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare
dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw
multi null plug rate route share shm softvol" ELIBC="glibc"
INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU"
VIDEO_CARDS="ati dummy fbdev mga nv sisusb v4l"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS

and because I was reading over the other bugs and this might be relevant:
 # equery list binutils
[ Searching for package 'binutils' in all categories among: ]
 * installed packages
[I--] [ -] sys-devel/binutils-2.17 (0)
[I--] [  ] sys-devel/binutils-config-1.9-r3 (0)

Lastly, the thing is trying to compile with Java 1.5 even though Java 1.4 is
installed and selected as the system VM.


Reproducible: Always

> !!! A complete build log is located at
> '/var/tmp/portage/sys-libs/db-4.3.29-r2/temp/build.log'.

Need the log attached.

Created an attachment (id=110438) [details]
Build Log

Reopen...

Do you use some kind of strange filesystem? The build fails when portage tries
to move files to their final destination.

Created an attachment (id=116438) [details]
Build Log

Oddly enough, I'm having the same issue...  and no weird files systems.

        Mount Output
/dev/sda2 on / type ext3 (rw,noatime)
proc on /proc type proc (rw,nosuid)
sysfs on /sys type sysfs (rw,nosuid,nodev,noexec)
udev on /dev type tmpfs (rw,nosuid)
devpts on /dev/pts type devpts (rw,nosuid,noexec)
none on /dev/shm type tmpfs (rw)
/dev/evms/usr on /usr type jfs
(rw,nodev,noatime,errors=remount-ro,iocharset=utf8)
/dev/evms/portage on /usr/portage type ext3 (rw,nodev,noatime)
/dev/evms/var on /var type jfs
(rw,nodev,noatime,errors=remount-ro,iocharset=utf8)
/dev/evms/home on /home type jfs
(rw,nosuid,nodev,noatime,errors=continue,iocharset=utf8)
/dev/evms/source on /home/portage/source type ext3 (rw,nosuid,nodev,noatime)
/dev/evms/tmp on /tmp type ext3 (rw,noexec,nosuid,nodev,noatime)
usbfs on /proc/bus/usb type usbfs (rw,noexec,nosuid,devmode=0664,devgid=85)
svcdir on /var/lib/init.d type tmpfs (rw,mode=0755,size=2048k)
nfsd on /proc/fs/nfs type nfsd (rw)
rpc_pipefs on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw)

        Emerge Info
Portage 2.1.2.2 (hardened/x86/2.6, gcc-3.4.6, glibc-2.3.6-r5, 2.6.18-cks1-grsec
i686)
=================================================================
System uname: 2.6.18-cks1-grsec i686 Pentium III (Coppermine)
Gentoo Base System release 1.12.9
Timestamp of tree: Sun, 08 Apr 2007 15:20:01 +0000
ccache version 2.4 [disabled]
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r6
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.60
sys-devel/automake:  1.4_p6, 1.6.3, 1.7.9-r1, 1.9.6-r2, 1.10
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.17-r2
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=pentium3 -O3 -ftracer -fomit-frame-pointer
-momit-leaf-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config /var/qmail/alias
/var/qmail/control"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo
/etc/texmf/web2c"
CXXFLAGS="-march=pentium3 -O3 -ftracer -fomit-frame-pointer
-momit-leaf-frame-pointer -pipe"
DISTDIR="/home/portage/source"
FEATURES="distlocks metadata-transfer noinfo parallel-fetch sandbox sfperms
strict userfetch"
GENTOO_MIRRORS="http://mirror.datapipe.net/gentoo
ftp://gentoo.chem.wisc.edu/gentoo ftp://gentoo.ccccom.com"
LANG="en_US"
LC_ALL="en_US"
LINGUAS="en"
MAKEOPTS="-j2"
PKGDIR="/home/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages
--filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/home/portage/local"
SYNC="rsync://rsync.us.gentoo.org/gentoo-portage"
USE="/ X acl berkdb bzip2 chroot ck-server cracklib crypt cups dri
dynamicplugin extensions extraengine gif gmp gtk gtk2 hardened idn jpeg kde
kdeenablefinal kdexdeltas kerberos ldap libclamav logitech-mouse midi mmx mysql
ncurses nls nomac nptl nptlonly overlays pam pcre perl pic png prelude pwdb
python readline samba sasl sguil sse ssl syslog tcl tcpd threads tiff tk
toolbar truetype truetype-fonts type1-fonts unicode utf8 winbind x86 xattr xml
xorg zlib" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty
extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null
plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse
evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216
lcdm001 mtxorb ncurses text" LINGUAS="en" USERLAND="GNU" VIDEO_CARDS="mga vesa"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS,
PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

(In reply to comment #4)
> The build fails when portage tries to move files to their final destination.

No it doesn't (src_install != merge). Going by the log this seems to be an
issue wih the documentation target in the Makefile. Dropping CC then, readd if
you can point out where portage screws up.

I'm having the same issue (db & java package) on JFS filesystem. I moved the
PORTAGE_TMPDIR to a nfs mount, because no other space was available, and now it
works.
I think it started with the last coreutils update. 

(In reply to comment #8)
> I'm having the same issue (db & java package) on JFS filesystem. I moved the
> PORTAGE_TMPDIR to a nfs mount, because no other space was available, and now it
> works.
> I think it started with the last coreutils update. 
> 

I have encountered fimiliar problem on my AMD64 system while using gcc-4.1.2 as
compiler. It was solved, at least it looks like so, by switching to gcc-3.3.6
and then recompiling.

same problem here while emerging update of glibc (glibc-2.5-r2)!
>> cp: preserving permissions for "/var/tmp/portage/sys-libs/glibc-2.5-r2/image/lib" No data available 
local file system: jfs
after switching PORTAGE_TMPDIR to nfs emerge is running smoothly!
Is this a problem of jfs or of portage?

*** This bug has been marked as a duplicate of bug 162664 ***