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Bug#: 136821
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Science Related Packages <sci@gentoo.org>
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Reporter: Jing Su <gtg602c@prism.gatech.edu>
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Bug 136821 depends on: Show dependency tree
Bug 136821 blocks:
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Description:   Opened: 2006-06-14 14:35 0000 
*************************
emerge error
*************************
ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
make -f Make.top shared-strip arch=Linux_21264GOTO_2
make[1]: Entering directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
mkdir -p gentoo/libs

Linking a really big library, please be patient...

cd gentoo/libatlas.a ; \
libtool --mode=link --tag=CC /usr/bin/gcc -o libatlas.la *.lo -rpath /usr/lib ;
\
libtool --mode=install install -s libatlas.la
/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS/gentoo/libs
libtool: link: `ATLU_cusergemm.lo' is not a valid libtool object
libtool: install: `libatlas.la' is not a valid libtool archive
Try `libtool --help --mode=install' for more information.
make[1]: *** [libatlas.so] Error 1
make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
make: *** [shared-strip] Error 2

!!! ERROR: sci-libs/blas-atlas-3.6.0-r1 failed.
!!! Function src_compile, Line 114, Exitcode 2
!!! (no error message)
!!! If you need support, post the topmost build error, NOT this status message.



*************************
emerge --info
*************************
Portage 2.0.54 (default-linux/alpha/2005.0, gcc-3.3.2, glibc-2.3.5-r3, 2.6.14.2
alpha)
=================================================================
System uname: 2.6.14.2 alpha EV68AL
Gentoo Base System version 1.6.14
dev-lang/python:     2.3.5, 2.4.2
dev-util/ccache:     [Not Present]
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.12
sys-devel/autoconf:  2.13, 2.59-r6
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1
sys-devel/binutils:  2.15.92.0.2-r10
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r4
ACCEPT_KEYWORDS="alpha"
AUTOCLEAN="yes"
CBUILD="alpha-unknown-linux-gnu"
CFLAGS="-pipe -O3 -mcpu=ev67"
CHOST="alpha-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.4/env
/usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config
/usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/
/usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/
/usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/eselect/compiler /etc/gconf /etc/terminfo /etc/env.d"
CXXFLAGS="-pipe -O3 -mcpu=ev67"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks sandbox sfperms strict"
GENTOO_MIRRORS="ftp://ftp.gtlib.cc.gatech.edu/pub/gentoo"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.us.gentoo.org/gentoo-portage"
USE="alpha X alsa arts audiofile berkdb bitmap-fonts bzip2 cli crypt cups curl
dri eds encode esd exif expat f77 fam font-server foomaticdb fortran gd gdbm
ggi gif glut gnome gpm gstreamer gtk gtk2 idn imagemagick imap imlib ipv6 jpeg
kde lcms ldap libg++ libwww mad mikmod mng motif mp3 mpeg nas ncurses nls ogg
oggvorbis opengl oss pam pcre pdflib perl plotutils png python qt quicktime
readline reflection samba sdl server session spell spl ssl tcpd tetex tiff
truetype truetype-fonts type1-fonts udev vorbis xml2 xmms xorg xv zlib
userland_GNU kernel_linux elibc_glibc"
Unset:  ASFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS,
PORTDIR_OVERLAY

------- Comment #1 From Donnie Berkholz 2006-06-14 17:21:39 0000 ------- 
If you run it interactively with 'interactive=1 emerge blas-atlas', what is the
default CPU choice? This looks suspiciously like the PPC issue we've been
having.

------- Comment #2 From Jing Su 2006-06-19 14:43:24 0000 ------- 
Could you give more detailed instruction please? How can I find out the default
CPU choice?

BTW, in CXXFLAGS it is set `-mcp=ev67' and 

 cat /var/tmp/portage/blas-atlas-3.6.0-r1/temp/environment |grep cpu

shows: 

CFLAGS='-pipe -O3 -mcpu=ev67'
CXXFLAGS='-pipe -O3 -mcpu=ev67'
    grep -qs 'UML' /proc/cpuinfo;
            MY_CCFLAGS="-O3 -mcpu=v8";
            MY_MMFLAGS="-O -mcpu=v8";
            MY_CCFLAGS="-O3 -mcpu=ultrasparc";
            MY_MMFLAGS="-O -mcpu=ultrasparc";

Thank you very much :-)

(In reply to comment #1)
> If you run it interactively with 'interactive=1 emerge blas-atlas', what is the
> default CPU choice? This looks suspiciously like the PPC issue we've been
> having.
>

------- Comment #3 From Nuno Sucena Almeida 2006-09-10 09:28:48 0000 ------- 
(In reply to comment #1)

I'm having the same problem:

Portage 2.1-r2 (default-linux/alpha/2006.1, gcc-3.4.6, glibc-2.3.6-r4,
2.6.16.19 alpha)
=================================================================
System uname: 2.6.16.19 alpha EV6
Gentoo Base System version 1.12.1
app-admin/eselect-compiler: [Not Present]
dev-lang/python:     2.4.3-r1
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     [Not Present]
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.13-r3
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r4
ACCEPT_KEYWORDS="alpha"
AUTOCLEAN="yes"
CBUILD="alpha-unknown-linux-gnu"
CFLAGS="-mieee -pipe -O3 -mcpu=ev6"
CHOST="alpha-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/texmf/dvipdfm/config/
/usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/
/usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/terminfo"
CXXFLAGS="-mieee -pipe -O3 -mcpu=ev6"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="http://distfiles.gentoo.org
http://distro.ibiblio.org/pub/linux/distributions/gentoo"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/sci"
SYNC="rsync://fileserver/gentoo-portage"
USE="alpha berkdb bitmap-fonts bzip2 cli crypt cups dlloader doc dri examples
fortran gdbm hdf hdf5 ipv6 isdnlog kerberos ldap libg++ ncurses nls nptl
nptlonly pam pcre perl ppds pppd python qt readline reflection session spl ssl
tcpd truetype truetype-fonts type1-fonts udev unicode xml xorg zlib elibc_glibc
input_devices_keyboard input_devices_mouse input_devices_evdev kernel_linux
userland_GNU video_cards_cirrus video_cards_ati video_cards_dummy
video_cards_fbdev video_cards_glint video_cards_mga video_cards_nv
video_cards_rendition video_cards_s3 video_cards_s3virge video_cards_savage
video_cards_siliconmotion video_cards_sisusb video_cards_tdfx video_cards_tga
video_cards_v4l video_cards_vga video_cards_voodoo"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS





ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
make -f Make.top shared-strip arch=Linux_21264GOTO
make[1]: Entering directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
mkdir -p gentoo/libs

Linking a really big library, please be patient...

cd gentoo/libatlas.a ; \
libtool --mode=link --tag=CC /usr/bin/gcc -o libatlas.la *.lo -rpath /usr/lib ;
\
libtool --mode=install install -s libatlas.la
/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS/gentoo/libs
libtool: link: `ATLU_cusergemm.lo' is not a valid libtool object
libtool: install: `libatlas.la' is not a valid libtool archive
Try `libtool --help --mode=install' for more information.
make[1]: *** [libatlas.so] Error 1
make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.6.0-r1/work/ATLAS'
make: *** [shared-strip] Error 2

!!! ERROR: sci-libs/blas-atlas-3.6.0-r1 failed.
Call stack:
  ebuild.sh, line 1539:   Called dyn_compile
  ebuild.sh, line 939:   Called src_compile
  blas-atlas-3.6.0-r1.ebuild, line 115:   Called die

!!! (no error message)
!!! If you need support, post the topmost build error, and the call stack if
relevant.

alpha-10 ~ # cat /var/tmp/portage/blas-atlas-3.6.0-r1/temp/environment |grep
cpu
CFLAGS='-mieee -pipe -O3 -mcpu=ev6'
CXXFLAGS='-mieee -pipe -O3 -mcpu=ev6'
            MY_CCFLAGS="-O3 -mcpu=v8";
            MY_MMFLAGS="-O -mcpu=v8";
            MY_CCFLAGS="-O3 -mcpu=ultrasparc";
            MY_MMFLAGS="-O -mcpu=ultrasparc";

------- Comment #4 From Markus Dittrich 2006-09-10 10:28:50 0000 ------- 
Unfortunately, I can not test on alpha, but this error indicates
that there was a problem compiling one of the PIC objects and
the build hence fails during linking. Could you please try 3.7.11 which is 
currently being stabled on most arches and see if that works!

Thanks,
Markus

------- Comment #5 From Christian Faulhammer 2007-06-29 10:24:13 0000 ------- 
Alpha, maybe you could check that again and confirm the current version is
working.

------- Comment #6 From Raúl Porcel 2007-06-29 13:52:56 0000 ------- 
(In reply to comment #5)
> Alpha, maybe you could check that again and confirm the current version is
> working.
> 

Can't test it, blas-atlas-3.6.0-r1 fails to check the USE-flags of gcc-4.1.2,
and newer blas-atlas doesn't work: bug 159002

------- Comment #7 From Raúl Porcel 2008-08-28 10:46:14 0000 ------- 
3.8.0 is stable, so this is fixed
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