Bugzilla Bug 133519

Making `install' in directory
/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src/cxx

make[2]: Entering directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src/cxx'
ar cru libnetcdf_c++.a netcdf.o ncvalues.o
i686-pc-linux-gnu-ranlib libnetcdf_c++.a
/bin/install -c libnetcdf_c++.a
/var/tmp/portage/netcdf-3.6.1/image//usr/lib/libnetcdf_c++.a
/bin/install -c netcdfcpp.h
/var/tmp/portage/netcdf-3.6.1/image//usr/include/netcdfcpp.h
/bin/install -c ncvalues.h
/var/tmp/portage/netcdf-3.6.1/image//usr/include/ncvalues.h
/bin/install -c netcdf.hh
/var/tmp/portage/netcdf-3.6.1/image//usr/include/netcdf.hh
make[2]: Leaving directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src/cxx'

Returning to directory /var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src

make[1]: Leaving directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src'
mv: cannot stat
`/var/tmp/portage/netcdf-3.6.1/image//usr/share/man/man3/netcdf.3f': No such
file or directory

!!! ERROR: sci-libs/netcdf-3.6.1 failed.
Call stack:
  ebuild.sh, line 1527:   Called dyn_install
  ebuild.sh, line 1005:   Called src_install
  netcdf-3.6.1.ebuild, line 43:   Called die

Without any "emerge --info" it's hard to tell, but I'll bet you don't have
Fortran support built in your gcc.  Try the updated version on a portage mirror
near you...

Accepting bug...

Seems you are right:

checking for i686-pc-linux-gnu-ifc... no
checking for i686-pc-linux-gnu-efc... no
checking for i686-pc-linux-gnu-pgf95... no
checking for i686-pc-linux-gnu-lf95... no
checking for i686-pc-linux-gnu-g95... no
checking for i686-pc-linux-gnu-f95... no
checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... no
checking whether i686-pc-linux-gnu-gfortran accepts -g... no
checking for i686-pc-linux-gnu-i686-pc-linux-gnu-gfortran... (cached)
i686-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) no
checking whether i686-pc-linux-gnu-gfortran accepts -g... (cached) no
checking "i686-pc-linux-gnu-gfortran" as Fortran-90 compiler... failed to build
test program
checking for xlf90... no
checking for f95... no
checking for f90... no
checking for pgf90... no
checking for g95... no
checking for gfortran... gfortran
checking F90 F90FLAGS... gfortran 
checking if F90 flag needed... 
checking Fortran-90 compiler "gfortran"... failed to build test program
configure: WARNING: "Could not find working Fortran-90 compiler"
configure: WARNING: "The Fortran-90 interface will not be built"
configure: checking for m4 preprocessor...
checking for m4... m4
checking m4 flags... -B10000


checking ARFLAGS... cru
checking type ar... ar is /usr/bin/ar
checking NM... nm
checking NMFLAGS... 
checking type nm... nm is /usr/bin/nm
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking user-defined Fortran-77 compiler "i686-pc-linux-gnu-gfortran"...
failed to compile test program
configure: WARNING: "The Fortran-77 interface will not be built"
checking for Fortran .F compiler... 
checking for Fortran preprocessor... i686-pc-linux-gnu-gcc -E
configure: checking for math library...
checking for tanh in -lc... no
checking for tanh in -lm... yes

make[1]: Leaving directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src'
mv: cannot stat
`/var/tmp/portage/netcdf-3.6.1/image/usr/share/man/man3/netcdf.3f': No such
file or directory

!!! ERROR: sci-libs/netcdf-3.6.1 failed.
Call stack:
  ebuild.sh, line 1531:   Called dyn_install
  ebuild.sh, line 1005:   Called src_install
  netcdf-3.6.1.ebuild, line 54:   Called die

Portage 2.1_rc3-r2 (default-linux/x86/2006.0, gcc-3.4.6, glibc-2.4-r3,
2.6.17-rc3 i686)
=================================================================
System uname: 2.6.17-rc3 i686 Mobile Intel(R) Pentium(R) 4 - M CPU 1.80GHz
Gentoo Base System version 1.12.0
dev-lang/python:     2.3.4-r1, 2.4.3-r1
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     [Not Present]
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2
sys-devel/binutils:  2.16.1-r2
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r5
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium4 -mmmx -msse -msse2 -fomit-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/lib/mozilla/defaults/pref /usr/share/X11/xkb /u
sr/share/config /usr/spool/PBS /var/bind /var/qmail/alias /var/qmail/control
/var/spool/PBS /var/vpopmail/domains /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/gconf /etc/revdep-rebuild /etc/terminfo
/etc/texmf/web2c /etc/env.d"
CXXFLAGS="-O2 -march=pentium4 -mmmx -msse -msse2 -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="http://distfiles.gentoo.org
http://distro.ibiblio.org/pub/linux/distributions/gentoo"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --tim
eout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="x86 FFmpeg X Xaw3d a52 aac aalib acpi alsa amr apache2 apm asf ati avi
berkdb bitmap-fonts bonobo caca cdparanoia cdr cli cpudetectio
n crypt cscope ctype cups curl dba dga directfb divx divx5 divx5linux dri dts
dv dvb dvd dvdr dvdread eds emacs emacs-w3 emboss encode eth
ereal evo f77 faad faad2 fam fame fbcon ffmpeg flac flash foomaticdb fortran
fvwm fvwm2 gb gd gdbm ggi gif gphoto2 gpm gstreamer gtk gtk2 
gtkhtml i8x0 icc iconv ieee1394 ifc imagemagick imlib imlib2 inifile innodb
isdnlog ithreads java jpeg kerberos lcms leim libcaca libg++ l
ibwww lirc live lzo mad matroska mcal mesa mhash mikmod ming mmx mmx2 mmxext
modplug motif mozilla mp3 mpeg mule musepack mysql ncurses ne
twork nls nptl nptlonly ogg oggvorbis opengl oss pam pcre pda pdflib perl
plotutils plugin png ppds pppd pthread pthreads python qt qtx qu
icktime readline reflection rtc samba scanner scp server session slp spell spl
sse sse2 ssl stroke tcltk tcpd tetex theora thread threads 
tiff truetype truetype-fonts type1-fonts udev unicode usb userlocales v4l v4l2
vcd vorbis win32codecs winvidix wmf x264 xanim xml xml2 xmm
s xorg xosd xprint xv xvid xvmc zeo zlib elibc_glibc kernel_linux userland_GNU
video_cards_ati"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
LINGUAS, MAKEOPTS, PORTAGE_RSYNC_EXTRA_OPTS

It looks like your fortran support is incomplete or broken somehow; you should
get something like this for GNU fortran:

checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes

Maybe the netcdf configure is horribly broken and sees gfortran when you have
none, and right now I can't find a box without either g77 or gfortran...  I've
updated the fortran detection stuff as best I could, but the netcdf configure
options don't have a --disable-fortran switch.

Try the updated ebuild, and make sure your fortran compiler actually works;
since you have "fortran" in your USE flags, I'm a little puzzled why you also
get "checking whether we are using the GNU Fortran compiler... no" right after
it detects gfortran (the new ebuild should take care of it if you only have
g77).

13:52:50 (50.07 KB/s) - `/usr/portage/distfiles/netcdf-3.6.1.tar.gz' saved
[883888/883888]

 * checking ebuild checksums ;-) ...                                           
                                                    [ ok ]
 * checking auxfile checksums ;-) ...                                          
                                                    [ ok ]
 * checking miscfile checksums ;-) ...                                         
                                                    [ ok ]
 * checking netcdf-3.6.1.tar.gz ;-) ...                                        
                                                    [ ok ]
 * You need one of these Fortran Compilers: gfortran ifc g77
 * Installed are:  gfortran ifort g77
>>> Unpacking source...
>>> Unpacking netcdf-3.6.1.tar.gz to /var/tmp/portage/netcdf-3.6.1/work
 * Applying fPIC.patch ...                                                     
                                                    [ ok ]
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src ...
 * econf: updating netcdf-3.6.1/src/config.guess with
/usr/share/gnuconfig/config.guess
 * econf: updating netcdf-3.6.1/src/config.sub with
/usr/share/gnuconfig/config.sub
./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man
--infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc
--localstatedir=/var/lib CPPFLAGS=-DpgiFortran --build=i686-pc-linux-gnu
configure: netCDF 3.6.1
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking whether configure should try to set compiler flags... no
checking whether netCDF is to be built in 64-bit mode... no
checking where to put large files... .
checking for top-level source-directory...
/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src
checking for i686-pc-linux-gnu-pathcc... no
checking for i686-pc-linux-gnu-xlc... no
checking for i686-pc-linux-gnu-icc... no
checking for i686-pc-linux-gnu-cc... no
checking for i686-pc-linux-gnu-c89... no
checking for i686-pc-linux-gnu-acc... no
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking for i686-pc-linux-gnu-pathCC... no
checking for i686-pc-linux-gnu-cl... no
checking for i686-pc-linux-gnu-KCC... no
checking for i686-pc-linux-gnu-CC... no
checking for i686-pc-linux-gnu-icpc... no
checking for i686-pc-linux-gnu-cxx... no
checking for i686-pc-linux-gnu-cc++... no
checking for i686-pc-linux-gnu-xlC... no
checking for i686-pc-linux-gnu-aCC... no
checking for i686-pc-linux-gnu-c++... i686-pc-linux-gnu-c++
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-c++ accepts -g... yes
checking C++ compiler "i686-pc-linux-gnu-c++"... works
checking for i686-pc-linux-gnu-pathf90... no
checking for i686-pc-linux-gnu-xlf... no
checking for i686-pc-linux-gnu-fort... no
checking for i686-pc-linux-gnu-xlf95... no
checking for i686-pc-linux-gnu-ifort... no
checking for i686-pc-linux-gnu-ifc... no
checking for i686-pc-linux-gnu-efc... no
checking for i686-pc-linux-gnu-pgf95... no
checking for i686-pc-linux-gnu-lf95... no
checking for i686-pc-linux-gnu-g95... no
checking for i686-pc-linux-gnu-f95... no
checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether i686-pc-linux-gnu-gfortran accepts -g... yes
checking for i686-pc-linux-gnu-i686-pc-linux-gnu-gfortran... (cached)
i686-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether i686-pc-linux-gnu-gfortran accepts -g... (cached) yes
checking "i686-pc-linux-gnu-gfortran" as Fortran-90 compiler... works
configure: checking for m4 preprocessor...
checking for m4... m4
checking m4 flags... -B10000
checking how to make dependencies... false
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGE_FILES value needed for large files... no
configure: checking for ar utility...
checking for ar... ar
checking ar flags... cru
configure: checking for nm utility...
checking for nm... nm
checking nm flags... 
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking for a BSD-compatible install... /bin/install -c
checking CPPFLAGS... -DpgiFortran
checking CC CFLAGS... i686-pc-linux-gnu-gcc -O2 -march=pentium4 -mmmx -msse
-msse2 -fomit-frame-pointer -pipe
checking type i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc is
/usr/bin/i686-pc-linux-gnu-gcc
checking CXX... i686-pc-linux-gnu-c++
checking CXXFLAGS... -O2 -march=pentium4 -mmmx -msse -msse2
-fomit-frame-pointer -pipe
checking type i686-pc-linux-gnu-c++... i686-pc-linux-gnu-c++ is
/usr/bin/i686-pc-linux-gnu-c++
checking FC... i686-pc-linux-gnu-gfortran
checking FFLAGS... 
checking type i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran is
/usr/bin/i686-pc-linux-gnu-gfortran
checking F90... i686-pc-linux-gnu-gfortran
checking F90FLAGS... 
checking type i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran is
/usr/bin/i686-pc-linux-gnu-gfortran
checking AR... ar
checking ARFLAGS... cru
checking type ar... ar is /usr/bin/ar
checking NM... nm
checking NMFLAGS... 
checking type nm... nm is /usr/bin/nm
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking user-defined Fortran-77 compiler "i686-pc-linux-gnu-gfortran"... works
checking for Fortran .F compiler... 
checking if Fortran-77 compiler handles *.F files... yes
checking for C-equivalent to Fortran routine "SUB"... sub_
checking for Fortran "byte"... yes
checking for Fortran "integer*2"... yes
checking if Fortran "byte" is C "signed char"... yes
checking if Fortran "byte" is C "short"... no
checking if Fortran "byte" is C "int"... no
checking if Fortran "byte" is C "long"... no
checking if Fortran "integer*2" is C "short"... yes
checking if Fortran "integer*2" is C "int"... no
checking if Fortran "integer*2" is C "long"... no
checking if Fortran "integer" is C "int"... yes
checking if Fortran "real" is C "float"... yes
checking if Fortran "doubleprecision" is C "double"... yes
checking for Fortran-equivalent to netCDF "byte"... byte
checking for Fortran-equivalent to netCDF "short"... integer*2
configure: checking for math library...
checking for tanh in -lc... no
checking for tanh in -lm... yes

[...]

make[2]: Entering directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src/f90'
i686-pc-linux-gnu-gfortran -c  typeSizes.f90
i686-pc-linux-gnu-gfortran -c  netcdf.f90
ar cru ../libsrc/libnetcdf.a netcdf.o typeSizes.o
i686-pc-linux-gnu-ranlib ../libsrc/libnetcdf.a
make[2]: Leaving directory
`/var/tmp/portage/netcdf-3.6.1/work/netcdf-3.6.1/src/f90'

So, I think I did not have fortran compiled into gcc, of otherwise I do not
understand that. Maybe older gcc-config/eselect-compiler profiles did not hav
it and maybe I was using some older profile? :(