Summary: | dev-perl/Bio-SamTools-1.430.0 fails configure ( Can't find libbam-0.1-legacy.so and/or bam-0.1-legacy/bam.h ) | ||
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Product: | Gentoo Linux | Reporter: | Kent Fredric (IRC: kent\n) (RETIRED) <kentnl> |
Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
Status: | RESOLVED FIXED | ||
Severity: | normal | CC: | joost.ruis, perl, slawomir.nizio |
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Attachments: | adds support for lib64 |
Description
Kent Fredric (IRC: kent\n) (RETIRED)
2018-07-14 02:34:25 UTC
Created attachment 621008 [details, diff]
adds support for lib64
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1442f328453dc90ea24b64ec3abd4e661504f408 commit 1442f328453dc90ea24b64ec3abd4e661504f408 Author: Kent Fredric <kentnl@gentoo.org> AuthorDate: 2020-05-20 17:00:14 +0000 Commit: Kent Fredric <kentnl@gentoo.org> CommitDate: 2020-05-20 17:01:20 +0000 dev-perl/Bio-SamTools: Add fixed version for bug #661112 - Reworked patches so the autodetection stuff is nixed, because its really silly and doesn't work. - Paths now computed in ebuild and passed explicitly - Fix handling of libdir for lib64 re bug #661112, but in a different way than proposed by Sławomir Nizio, mostly because I didn't see that suggestion until after I'd done all my changes (but also because relying on a hardcoded path in the code is also fragile) - Converted to EAPI7 - Removed unused empty variable assignments Bug: https://bugs.gentoo.org/661112 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org> .../Bio-SamTools/Bio-SamTools-1.430.0-r1.ebuild | 38 +++++++ .../files/Bio-SamTools-1.430.0-legacy-r1.patch | 110 +++++++++++++++++++++ 2 files changed, 148 insertions(+) Your solution is obviously better, thanks! The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2a866fb9126e4c0a780620e041598cc6d3726ad3 commit 2a866fb9126e4c0a780620e041598cc6d3726ad3 Author: Kent Fredric <kentnl@gentoo.org> AuthorDate: 2020-06-20 04:28:41 +0000 Commit: Kent Fredric <kentnl@gentoo.org> CommitDate: 2020-06-20 04:28:41 +0000 dev-perl/Bio-SamTools: Cleanup old 1.430.0 - Unstable(~) eclipsed by 1.430.0-r1 for ~1 month Closes: https://bugs.gentoo.org/661112 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org> dev-perl/Bio-SamTools/Bio-SamTools-1.430.0.ebuild | 33 -------- .../files/Bio-SamTools-1.430.0-legacy.patch | 88 ---------------------- 2 files changed, 121 deletions(-) |