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# emerge -vu xindice
Calculating dependencies ...done!
>>> emerge (1 of 1) dev-db/xindice-1.0-r1 to /
>>> md5 src_uri ;-) xml-xindice-1.0.tar.gz
>>> Unpacking source...
>>> Unpacking xml-xindice-1.0.tar.gz to /mnt/oktet/tmp/portage/xindice-1.0-r1/work
 * Applying xindice-1.0-r1.patch...                                       [ ok ]
>>> Source unpacked.
dirname bin
.:bin/../java/lib/xmldb.jar:bin/../java/lib/xmldb-xupdate.jar:bin/../java/lib/xmldb-sdk.jar:bin/../java/lib/xml-apis-1.0.jar:bin/../java/lib/xindice.jar:bin/../java/lib/xerces-1.4.3.jar:bin/../java/lib/xalan-2.0.1.jar:bin/../java/lib/openorb_tools-1.2.0.jar:bin/../java/lib/openorb-1.2.0.jar:bin/../java/lib/infozone-tools.jar:bin/../java/lib/examples.jar:bin/../java/lib/ant-1.4.1.jar:/usr/share/ant/lib/ant-antlr.jar:/usr/share/ant/lib/ant-apache-bcel.jar:/usr/share/ant/lib/ant-apache-bsf.jar:/usr/share/ant/lib/ant-apache-log4j.jar:/usr/share/ant/lib/ant-apache-oro.jar:/usr/share/ant/lib/ant-apache-regexp.jar:/usr/share/ant/lib/ant-apache-resolver.jar:/usr/share/ant/lib/ant-commons-logging.jar:/usr/share/ant/lib/ant-commons-net.jar:/usr/share/ant/lib/ant-icontract.jar:/usr/share/ant/lib/ant-jai.jar:/usr/share/ant/lib/ant-javamail.jar:/usr/share/ant/lib/ant-jdepend.jar:/usr/share/ant/lib/ant-jmf.jar:/usr/share/ant/lib/ant-jsch.jar:/usr/share/ant/lib/ant-junit.jar:/usr/share/ant/lib/ant-launcher.jar:/usr/share/ant/lib/ant-netrexx.jar:/usr/share/ant/lib/ant-nodeps.jar:/usr/share/ant/lib/ant-starteam.jar:/usr/share/ant/lib/ant-stylebook.jar:/usr/share/ant/lib/ant-swing.jar:/usr/share/ant/lib/ant-trax.jar:/usr/share/ant/lib/ant-vaj.jar:/usr/share/ant/lib/ant-weblogic.jar:/usr/share/ant/lib/ant-xalan1.jar:/usr/share/ant/lib/ant-xslp.jar:/usr/share/ant/lib/ant.jar:/usr/share/ant/lib/jdepend.jar:/usr/share/ant/lib/junit.jar:/opt/sun-jdk-1.4.2.05/lib/tools.jar
Buildfile: build.xml

BUILD FAILED

java.lang.NoSuchMethodError: org.apache.tools.ant.taskdefs.condition.Os.isFamily(Ljava/lang/String;)Z
        at org.apache.tools.ant.taskdefs.optional.sitraka.CovBase.<clinit>(CovBase.java:35)
        at java.lang.Class.forName0(Native Method)
        at java.lang.Class.forName(Class.java:141)
        at org.apache.tools.ant.Project.init(Project.java:178)
        at org.apache.tools.ant.Main.runBuild(Main.java:420)
        at org.apache.tools.ant.Main.start(Main.java:153)
        at org.apache.tools.ant.Main.main(Main.java:176)

Total time: 0 seconds
org.apache.tools.ant.taskdefs.condition.Os.isFamily(Ljava/lang/String;)Z

!!! ERROR: dev-db/xindice-1.0-r1 failed.
!!! Function src_compile, Line 35, Exitcode 1
!!! compile failed

#  ant -v
Apache Ant version 1.6.2 compiled on July 31 2004


Reproducible: Always
Steps to Reproduce:
# emerge -pvu xindice
Actual Results:  
FAILURE 

Expected Results:  
must compile and install with no errors 

Portage 2.0.50-r9 (default-x86-1.4, gcc-3.3.4, glibc-2.3.4.20040808-r0, 2.6.8) 
================================================================= 
System uname: 2.6.8 i686 AMD Athlon(tm) XP 2500+ 
Gentoo Base System version 1.5.3 
ccache version 2.3 [enabled] 
Autoconf: sys-devel/autoconf-2.59-r4 
Automake: sys-devel/automake-1.8.5-r1 
ACCEPT_KEYWORDS="x86 ~x86" 
AUTOCLEAN="yes" 
CFLAGS="-O3 -mcpu=athlon-xp -msse -mfpmath=sse -mmmx -m3dnow 
-fomit-frame-pointer -ffast-math -funroll-loops -fprefetch-loop-arrays -pipe" 
CHOST="i686-pc-linux-gnu" 
COMPILER="gcc3" 
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config /usr/kde/3.3/share/config:/usr/kde/3.3/env:/usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" 
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" 
CXXFLAGS="-O3 -mcpu=athlon-xp -msse -mfpmath=sse -mmmx -m3dnow 
-fomit-frame-pointer -ffast-math -funroll-loops -fprefetch-loop-arrays -pipe" 
DISTDIR="/mnt/oktet/tmp/distfiles" 
FEATURES="autoaddcvs ccache sandbox" 
GENTOO_MIRRORS="http://gentoo.oregonstate.edu 
http://distro.ibiblio.org/pub/Linux/distributions/gentoo" 
MAKEOPTS="-j2" 
PKGDIR="/usr/portage/packages" 
PORTAGE_TMPDIR="/mnt/oktet/tmp" 
PORTDIR="/usr/portage" 
PORTDIR_OVERLAY="/usr/local/portage" 
SYNC="rsync://rsync.gentoo.org/gentoo-portage" 
USE="3dnow X alsa apm arts avi berkdb cdr crypt cups dga doc encode esd 
foomaticdb gdbm gif gnome gpm gtk gtk2 imlib java jpeg kde ldap libg++ libwww 
mad mikmod mmx motif mozilla mpeg mysql nas ncurses nls nptl oggvorbis opengl 
pam pdflib perl pic png postgres python qt quicktime readline ruby sdl slang 
spell sse ssl tcltk tcpd tetex truetype x86 xml2 xmms xv zlib"

Maybe I just don't see it in your bug report, but which java version are using?
Works fine for me with sun-jdk-1.4.2.04. 
(moved the warning about the jdk from pkg_preinst to pkg_setup now)

# java -version
java version "1.4.2_05"
Java(TM) 2 Runtime Environment, Standard Edition (build 1.4.2_05-b04)
Java HotSpot(TM) Client VM (build 1.4.2_05-b04, mixed mode)

It looks like some library is missing for Ant. 

# epm -qaG | grep dev-java

dev-java/bcel-5.1
dev-java/commons-net-1.2.2
dev-java/xerces-2.6.2-r1
dev-java/log4j-1.2.8
dev-java/ibm-jdk-bin-1.4.2
dev-java/xerces-2.6.2
dev-java/commons-logging-1.0.4
dev-java/javahelp-bin-2.0.01
dev-java/bsh-2.0_beta1
dev-java/commons-cli-1.0-r2
dev-java/jython-bin-2.1-r3
dev-java/avalon-logkit-bin-1.2.2
dev-java/regexp-bin-1.3
dev-java/ant-optional-1.6.2-r2
dev-java/jdepend-2.7
dev-java/rhino-1.5_rc5
dev-java/jsch-0.1.16
dev-java/xalan-2.6.0
dev-java/antlr-2.7.4
dev-java/oro-2.0.8
dev-java/antlr-2.7.2
dev-java/junit-3.8.1
dev-java/jzlib-1.0.5
dev-java/sun-jdk-1.4.2.05
dev-java/systray4j-2.4
dev-java/jikes-1.21
dev-java/ant-1.6.2-r2
dev-java/java-sdk-docs-1.4.2
dev-java/blackdown-jdk-1.4.2_rc1-r1
dev-java/java-config-1.2.10
dev-java/commons-collections-3.1
dev-java/commons-beanutils-1.7.0

Please give -r2 a try when it hits your portage mirror. I didn't really find
out what goes wrong, but using an external "ant" instead of the one found by
the script supplied by the package makes it work for me.
Fixed another issue: The init script was referring to a wrong path.
Please re-open if you still have problems.