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I have what appears to be the same bug as #45246: my latest emerge world
brought in gtk+-2.4.0-r1, and now im-ja-1.0-r2 won't emerge.  The error is:

gcc -g -O2 -fstack-protector -g -g -g -o im-ja-conf im_ja_conf-im-ja-conf.o
im_ja_conf-conf.o im_ja_conf-error.o im_ja_conf-about-box.o
-Wl,--export-dynamic -pthread -Wl,--export-dynamic -Wl,--export-dynamic 
/usr/lib/libgconf-2.so /usr/lib/libORBit-2.so /usr/lib/libpopt.so
/usr/lib/libgthread-2.0.so /usr/lib/libglade-2.0.so /usr/lib/libgtk-x11-2.0.so
/usr/lib/libxml2.so -lpthread -lz /usr/lib/libgdk-x11-2.0.so
/usr/lib/libatk-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm
/usr/lib/libpangoxft-1.0.so /usr/lib/libpangox-1.0.so /usr/lib/libpango-1.0.so
/usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so -ldl
/usr/lib/libglib-2.0.so /usr/lib/libwnn.so -lcrypt -lRKC
im_ja_conf-im-ja-conf.o(.text+0x2044): In function `create_dialog':
/var/tmp/portage/im-ja-1.0-r2/work/im-ja-1.0/src/im-ja-conf/im-ja-conf.c:674:
undefined reference to `GTK_OPTION_MENU'
im_ja_conf-im-ja-conf.o(.text+0x2071):/var/tmp/portage/im-ja-1.0-r2/work/im-ja-1.0/src/im-ja-conf/im-ja-conf.c:675:
undefined reference to `GTK_OPTION_MENU'
collect2: ld returned 1 exit status


Reproducible: Always
Steps to Reproduce:
1. emerge -DU world
2.
3.

Actual Results:  
emerge of app-i18n/im-ja-1.0-r2 failed.

Expected Results:  
emerged successfully

Portage 2.0.50-r6 (default-x86-1.4, gcc-3.3.2, glibc-2.3.2-r9, 2.6.6-rc2)
=================================================================
System uname: 2.6.6-rc2 i686 AMD Athlon(tm) XP 1900+
Gentoo Base System version 1.4.9
Autoconf: sys-devel/autoconf-2.59-r3
Automake: sys-devel/automake-1.8.3
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CFLAGS="-g -O2 -fstack-protector"
CHOST="i686-pc-linux-gnu"
COMPILER="gcc3"
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config
/usr/kde/3.1/share/config /usr/kde/3.2/share/config /usr/kde/3/share/config
/usr/lib/mozilla/defaults/pref /usr/share/config
/usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/
/usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/
/usr/share/texmf/xdvi/ /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
CXXFLAGS="-g -O2 -fstack-protector"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs fixpackages nostrip sandbox userpriv"
GENTOO_MIRRORS="http://mirror.datapipe.net/gentoo ftp://gentoo.ccccom.com
http://gentoo.ccccom.com ftp://gentoo.netnitco.net/pub/mirrors/gentoo/source/
ftp://mirrors.tds.net/gentoo http://mirrors.tds.net/gentoo"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow X Xaw3d aalib apm arts avi berkdb canna cdr cjk crypt cups debug doc
dvd encode esd foomaticdb freetype freewnn gdbm gif gnome gpm gtk gtk2 guile
imlib java joystick jpeg kde libg++ libwww mad maildir matrox mbox mikmod
mozilla mozsvg mpeg mule ncurses nls oggvorbis opengl oss pam pdflib perl png
python qt quicktime readline ruby scanner sdl slang spell sse ssl svga tcltk
tcpd tetex tiff truetype usb video_cards_matrox x86 xinerama xml2 xmms xv zlib"

This is because you have debug in USE flag. I removed debug USE flag
from 1.0-r2. Thanks for the report.

Well, I just tried emerging app-i18n/im-ja-1.0-r2 again; I have the new ebuild
(I can see where the debug stuff was commented out), but the emerge failed with
the same error.  In the emerge output, I see:

configure: Debugging:                yes

USE=-debug emerge im-ja worked, and in that case I see:

configure: Debugging:                no

so it looks like the "debug" flag is still being set (maybe in gnome2.eclass:
there's code there that looks like it might be doing that, but I don't
understand it well enough to be sure).

You are right. gnome2.eclass pulls in debug IUSE flag.
I changed src_compile() to not use gnome2_src_compile.
(Debugging
Thanks for the bug report.

With im-ja-1.1, I'm getting the same errors:

...
configure: Debugging:                yes
...
gcc -g -O2 -fstack-protector -g -g -g -o im-ja-conf im_ja_conf-im-ja-conf.o im_ja_conf-conf.o im_ja_conf-error.o im_ja_conf-about-box.o -Wl,--export-dynamic -pthread -Wl,--export-dynamic -Wl,--export-dynamic  /usr/lib/libgconf-2.so /usr/lib/libORBit-2.so /usr/lib/libpopt.so /usr/lib/libgthread-2.0.so /usr/lib/libglade-2.0.so /usr/lib/libgtk-x11-2.0.so /usr/lib/libxml2.so -lpthread -lz /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm /usr/lib/libpangoxft-1.0.so /usr/lib/libpangox-1.0.so /usr/lib/libpango-1.0.so /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so -ldl /usr/lib/libglib-2.0.so
im_ja_conf-im-ja-conf.o(.text+0x2234): In function `create_dialog':
/var/tmp/portage/im-ja-1.1/work/im-ja-1.1/src/im-ja-conf/im-ja-conf.c:640: undefined reference to `GTK_OPTION_MENU'
im_ja_conf-im-ja-conf.o(.text+0x2261):/var/tmp/portage/im-ja-1.1/work/im-ja-1.1/src/im-ja-conf/im-ja-conf.c:641: undefined reference to `GTK_OPTION_MENU'
collect2: ld returned 1 exit status
make[3]: *** [im-ja-conf] Error 1
make[3]: Leaving directory `/var/tmp/portage/im-ja-1.1/work/im-ja-1.1/src/im-ja-conf'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/var/tmp/portage/im-ja-1.1/work/im-ja-1.1/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/im-ja-1.1/work/im-ja-1.1'
make: *** [all] Error 2

!!! ERROR: app-i18n/im-ja-1.1 failed.
!!! Function gnome2_src_compile, Line 39, Exitcode 2
!!! compile failure

For now, I just put the line:

app-i18n/im-ja -debug

in the file /etc/portage/package.use, which is an okay work around.

Thanks for the reminder. I disabled that on both 1.1 and 1.2..