| Summary: | sci-chemistry/pymol-1.5.0.3: incorrect location of the chempy scripts directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | urcindalo <urcindalo> |
| Component: | Current packages | Assignee: | Justin Lecher (RETIRED) <jlec> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
Booo, why can't things just work? I will look into that. +*pymol-1.5.0.3-r1 (28 Mar 2012) + + 28 Mar 2012; Justin Lecher <jlec@gentoo.org> + files/pymol-1.5.0.1-data-path.patch, +pymol-1.5.0.3-r1.ebuild: + Add missing wrong usage of PYMOL_PATH, #409971 + |
When trying to perform a mutagenesis in PyMOL 1.5.0.3 (probably on every 1.5 version, I didn't test), pymol can't find the chempy script: === Traceback (most recent call last): File "/usr/lib64/python2.7/site-packages/pymol/parser.py", line 254, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File "/usr/lib64/python2.7/site-packages/pymol/wizarding.py", line 86, in wizard r = _wizard(name,arg,kwd,0,_self=_self) File "/usr/lib64/python2.7/site-packages/pymol/wizarding.py", line 45, in _wizard wiz = apply(getattr(mod_obj,oname),arg,kwd) File "/usr/lib64/python2.7/site-packages/pymol/wizard/mutagenesis.py", line 56, in __init__ "/chempy/sidechains/sc_bb_ind.pkl") File "/usr/lib64/python2.7/site-packages/chempy/pkl.py", line 23, in fromFile fp = self.my_open(fname,'rb') File "/usr/lib64/python2.7/site-packages/chempy/__init__.py", line 173, in my_open return open(fname,mode) IOError: [Errno 2] No such file or directory: '//usr/lib64/python2.7/site-packages/pymol/chempy/sidechains/sc_bb_ind.pkl' === On my system the file is located at /usr/share/pymol/data/chempy/sidechains/sc_bb_ind.pkl NOT /usr/lib64/python2.7/site-packages/pymol/chempy/sidechains/sc_bb_ind.pkl