Summary: | =sci-biology/wise-2.2.0 fails to build with glibc 2.10+ | ||
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Product: | Gentoo Linux | Reporter: | Robert Bradbury <robert.bradbury> |
Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
Status: | RESOLVED FIXED | ||
Severity: | normal | ||
Priority: | High | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Bug Depends on: | |||
Bug Blocks: | 270353 | ||
Attachments: | sqio.c source file with altered getline() function name |
Description
Robert Bradbury
2009-07-19 10:26:48 UTC
Created attachment 198458 [details]
sqio.c source file with altered getline() function name
This should allow the building of the HMMer2 subset of wise. Also, lack of a wise included hmmer should not prevent building because one can edit the makefile (or perhaps use environment variables) to adjust HMMER_DEFINE, HMMER_INCLUDE and HMMER_LIBS to use a foreign hmmer.
Also, looking at the EMBL-EBI web site for Wise2 (http://www.ebi.ac.uk/Tools/Wise2/index.html), it would appear that they consider v. 2.1.20 to be the "stable" release, so perhaps Gentoo should backtrack to include an ebuild version for that as well. fixed |