Bug 267628

Summary:	sci-libs/mathgl-1.8.1: does not compile with >=sci-libs/hdf5-1.8.2
Product:	Gentoo Linux	Reporter:	Kacper Kowalik (Xarthisius) (RETIRED) <xarthisius>
Component:	[OLD] Library	Assignee:	Andrey Grozin <grozin>
Status:	RESOLVED FIXED
Severity:	normal	CC:	jarausch, sci
Priority:	High
Version:	unspecified
Hardware:	x86
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	added check for HDF5 version Fixing API

Description Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2009-04-27 08:09:05 UTC

Due to the slight API changes in HDF5, mathgl no longer compiles.

Reproducible: Always

Steps to Reproduce:

Comment 1 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2009-04-27 08:10:31 UTC

Created attachment 189590 [details, diff]
added check for HDF5 version

Comment 2 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2009-04-27 08:11:04 UTC

Created attachment 189591 [details, diff]
Fixing API

Comment 3 Andrey Grozin gentoo-dev

2009-05-02 16:05:17 UTC

I cannot test this because hdf5-1.8 is not in portage (and not in science overlay). Maybe, it's better to wait?

Comment 4 Sébastien Fabbro (RETIRED) gentoo-dev

2009-08-26 07:00:04 UTC

something like "use hdf5 && append-flags -DH5_USE_16_API" should be enough.

Comment 5 Helmut Jarausch 2009-08-26 07:47:51 UTC

(In reply to comment #4)
> something like "use hdf5 && append-flags -DH5_USE_16_API" should be enough.
> 

I've added that as the first line in src_configure, but it didn't help.

Comment 6 Helmut Jarausch 2009-08-26 08:03:17 UTC

(In reply to comment #2)
> Created an attachment (id=189591) [edit]
> Fixing API
> 

Unfortunately it fails again with sci-libs/hdf5-1.8.3

e.g.
/usr/include/H5Epublic.h:174: error: too few arguments to function 'herr_t H5Eset_auto2(hid_t, herr_t (*)(hid_t, void*), void*)'

Comment 7 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2009-08-26 09:14:02 UTC

(In reply to comment #6)

> Unfortunately it fails again with sci-libs/hdf5-1.8.3

Have you tried the patches??

Comment 8 Helmut Jarausch 2009-08-26 09:19:48 UTC

(In reply to comment #7)
> (In reply to comment #6)
> 
> > Unfortunately it fails again with sci-libs/hdf5-1.8.3
> 
> Have you tried the patches??
> 

Yes, but they seem to be included already, thus patch fails.

Comment 9 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev

2009-08-26 18:01:56 UTC

(In reply to comment #8)
>
> Yes, but they seem to be included already, thus patch fails.
> 
Patches are not included neither in portage, nor in original library and If you get error: too few arguments to function H5Eset_auto there were definitely _NOT_ applied.

Since there is new version of mathgl (1.9.0.1) I've also created a bump (#282821) with slightly less invasive HDF5 patches. Maybe give it another try.

Comment 10 Andrey Grozin gentoo-dev

2009-09-15 04:24:31 UTC

1.9.0.1 is in the tree, and compiles with hdf5-1.8. Closing.