Bug 221165 - sci-biology/t-coffee-5.65: stabilization request
Bug#: 221165 Product:  Gentoo Linux Version: unspecified Platform: All
OS/Version: Linux Status: RESOLVED Severity: normal Priority: P2
Resolution: FIXED Assigned To: sci-biology@gentoo.org Reported By: mmokrejs@ribosome.natur.cuni.cz
Component: Applications
URL: 
Summary: sci-biology/t-coffee-5.65: stabilization request
Keywords:  STABLEREQ
Status Whiteboard: 
Opened: 2008-05-10 05:47 0000
Description:   Opened: 2008-05-10 05:47 0000 
Please stabilize for x86 and amd64, on May 14 will be a month in the tree. ;-)

------- Comment #1 From Olivier Fisette 2008-07-06 21:41:11 0000 ------- 
Stable on amd64.

x86 and ppc:

To test, after compiling t-coffee, copy the "sample_seq1.fasta" file from
"/usr/share/t-coffee/example" to your home directory. This file contains the
amino acid sequences for four homologs of a protein in different species. Run
"t_coffee sample_seq1.fasta" to have t-coffee align the sequences, calculate
the alignment scores, construct a dendrogram, etc. Output files are created in
the working directory.

You can check the validity of the calculations by comparing the file
"sample_seq1.aln" with the files I am attaching. Both aligments are valid; you
will (should) get one or the other depending on your CPU.

------- Comment #2 From Olivier Fisette 2008-07-06 21:42:20 0000 ------- 
Created an attachment (id=159740) [details]
Resulting alignment - 1st possibility

------- Comment #3 From Olivier Fisette 2008-07-06 21:42:45 0000 ------- 
Created an attachment (id=159741) [details]
Resulting alignment - 2nd possibility

------- Comment #4 From Christian Faulhammer 2008-07-08 05:59:42 0000 ------- 
x86 stable

------- Comment #5 From nixnut 2008-07-14 17:02:44 0000 ------- 
ppc stable. closing since we're last.