Bug 221159 - sci-biology/biopython-1.44: stabilization request
Bug#: 221159 Product:  Gentoo Linux Version: unspecified Platform: All
OS/Version: Linux Status: RESOLVED Severity: normal Priority: P2
Resolution: FIXED Assigned To: sci-biology@gentoo.org Reported By: mmokrejs@ribosome.natur.cuni.cz
Component: Development
URL: 
Summary: sci-biology/biopython-1.44: stabilization request
Keywords:  STABLEREQ
Status Whiteboard: 
Opened: 2008-05-10 05:28 0000
Description:   Opened: 2008-05-10 05:28 0000
Please stabilize for x86 and amd64

------- Comment #1 From Olivier Fisette 2008-07-06 15:22:34 0000 -------
Stable on amd64.

Other arches: Please stabilise this version. You can test a Biopython
installation in an interactive Python interpreter by typing the following
commands:

>>> from Bio.Seq import Seq
>>> from Bio.Alphabet.IUPAC import unambiguous_dna
>>> new_seq = Seq('GATCAGAAG', unambiguous_dna)
>>> new_seq[0:2]
Seq('GA', IUPACUnambiguousDNA())
>>> from Bio import Translate
>>> translator = Translate.unambiguous_dna_by_name["Standard"]
>>> translator.translate(new_seq)
Seq('DQK', HasStopCodon(IUPACProtein(), '*'))

Martin: Thanks for the notice. You might also want to check version 1.47 that I
just added to the tree.

------- Comment #2 From Raúl Porcel 2008-07-07 15:50:12 0000 -------
alpha/sparc/x86 stable

------- Comment #3 From nixnut 2008-07-14 16:58:04 0000 -------
ppc stable. closing since we're last