Hi Alex,
First, could you try with MAKEOPTS=-j1? If it stills fails, in order to try to
reproduce, I would need:
1) emerge --info, and could you also provide:
2) result of:
eselect blas show
eselect cblas show
eselect lapack show
3) which fortran compiler are you using.
Thanks.
Sébastien,
I can reproduce it here on my opteron with -j1 both
with atlas and reference. This looks like a linking problem
between some C and Fortran routine. Interestingly, -r2 seems
to compile so it may well be another one of these issues we had
when dealing with the clapack patch.
Markus
Sébastien,
1. scipy-0.6.0-r3 has the same problem
2. scipy-0.6.0-r2 compiling OK
3. with MAKEOPTS=-j1 failed
4. emerge --info
Portage 2.1.5_rc3 (default-linux/x86/2006.1, gcc-4.2.3, glibc-2.7-r2,
2.6.23-gentoo-r4 i686)
=================================================================
System uname: 2.6.23-gentoo-r4 i686 unknown
Timestamp of tree: Tue, 15 Apr 2008 19:30:01 +0000
app-shells/bash: 3.2_p33
dev-java/java-config: 1.3.7, 2.1.4
dev-lang/python: 2.4.4-r9, 2.5.1-r5
dev-python/pycrypto: 2.0.1-r6
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox: 1.2.18.1-r2
sys-devel/autoconf: 2.13, 2.62
sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1
sys-devel/binutils: 2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool: 1.5.26
virtual/os-headers: 2.6.24
ACCEPT_KEYWORDS="x86 ~x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/config /var/bind"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf
/etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5
/ext-active/ /etc/php/cli-php5/ext-active/ /etc/terminfo /etc/texmf/web2c
/etc/udev/rules.d"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="metadata-transfer parallel-fetch sfperms strict unmerge-orphans
userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org
http://distro.ibiblio.org/pub/linux/distributions/gentoo"
LANG="ru_RU.UTF-8"
LDFLAGS=""
LINGUAS="ru"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --stats --timeout=180 -
-exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac alsa berkdb bitmap-fonts cli cracklib crypt cups doc dri encode
fftw fortran gdbm gpm iconv isdnlog midi mmx mp2 mp3 m
udflap ncurses nls nptl nptlonly openmp pam pcre perl ppds pppd python qt3
qt3support readline reflection sandbox session spl sse sse
2 ssl tcpd truetype-fonts type1-fonts unicode win32codecs x86 xorg xvi zlib"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca
0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel
intel8x0 intel8x0m maestro3 trident usb-audio vi
a82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare
dsnoop empty extplug file hooks iec958 ioplug ladspa l
float linear meter mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_an
on authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile
authz_host authz_owner authz_user autoindex cache dav d
av_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter
headers include info log_config logio mem_cache mime m
ime_magic negotiation rewrite setenvif speling status unique_id userdir
usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard
mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216
lcdm001 mtxorb ncurses text" LINGUAS="ru" USERLAND="GNU"
VIDEO_CARDS="vesa nv nvidia ati radeon r128 fglrx"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL,
PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_O
PTS
5. eselect blas show
lib: reference
6. eselect cblas show
lib: gsl
7. eselect lapack show
lib: reference
8. /usr/bin/gfortran --version
GNU Fortran (GCC) 4.2.3 (Gentoo 4.2.3 p1.0)
