Bug 190631 - dev-lisp/gcl-2.6.7-r2 fails to compile at x86_64 systems
Bug#: 190631 Product:  Gentoo Linux Version: 2007.0 Platform: All
OS/Version: Linux Status: RESOLVED Severity: normal Priority: P2
Resolution: FIXED Assigned To: common-lisp@gentoo.org Reported By: rose@rz.uni-potsdam.de
Component: Applications
URL: 
Summary: dev-lisp/gcl-2.6.7-r2 fails to compile at x86_64 systems
Keywords:  
Status Whiteboard: 
Opened: 2007-08-29 12:26 0000
Description:   Opened: 2007-08-29 12:26 0000 
'emerge -vD gcl' fails with:

ranlib libgclp.a
cp init_pre_gcl.lsp.in init_pre_gcl.lsp.tmp
touch raw_pre_gcl_map
gcc -o raw_pre_gcl  \
                -L.  -Wl,-Map raw_pre_gcl_map   -lpre_gcl -lSM -lICE 
-L/usr/lib64 -lXmu -lXt -lXext -lXaw -lX11    -lm  -lgmp -lreadline -lncurses
-lc -lgclp 
cat init_pre_gcl.lsp.tmp | sed \
                -e "s#@LI-VERS@#(`cat ../majvers`.`cat ../minvers`) `date`#1" \
                -e "s#@LI-EXTVERS@#`cat ../minvers | cut -f2 -d.`#1" \
                -e "s#@LI-MINVERS@#`cat ../minvers | cut -f1 -d.`#1" \
                -e "s#@LI-MAJVERS@#`cat ../majvers`#1" \
                -e "s#@LI-CC@#\"gcc -c -O2 -march=k8  -Wall -DVOL=volatile
-fsigned-char -pipe \"#1" \
                -e "s#@LI-LD@#\"gcc -o \"#1" \
                -e "s#@LI-LD-LIBS@#\"   -lpre_gcl -lSM -lICE  -L/usr/lib64
-lXmu -lXt -lXext -lXaw -lX11    -lm  -lgmp -lreadline -lncurses -lc -lgclp
\"#1" \
                -e "s#@LI-OPT-THREE@#\"-O3 -fomit-frame-pointer\"#1" \
                -e "s#@LI-OPT-TWO@#\"-O\"#1" \
                -e "s#@LI-INIT-LSP@#\"init_pre_gcl.lsp\"#1" >init_pre_gcl.lsp
cp init_pre_gcl.lsp foo
echo " (in-package \"USER\")(system:save-system \"saved_pre_gcl\")" >>foo
/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/unixport/raw_pre_gcl
/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/unixport/ -libdir
/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/ < foo
GCL (GNU Common Lisp)  April 1994  262144 pages
Building symbol table for
/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/unixport/raw_pre_gcl ..
I'm not an object
Lisp initialization failed.
rm raw_pre_gcl
make[1]: Leaving directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/unixport'
(cd lsp; touch *.lsp ; make all)
make[1]: Entering directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/lsp'
make[1]: Leaving directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/lsp'
(cd cmpnew; touch *.lsp ; make all)
make[1]: Entering directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/cmpnew'
make[1]: Leaving directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/cmpnew'
[ "-L/usr/lib64 -lXmu -lXt -lXext -lXaw -lX11" == "" ] || (cd xgcl-2 && make
LISP=../unixport/saved_pre_gcl)
make[1]: Entering directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/xgcl-2'
make[1]: *** No rule to make target `../unixport/saved_pre_gcl', needed by
`objects'.  Stop.
make[1]: Leaving directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r2/work/gcl-2.6.7/xgcl-2'
make: *** [unixport/saved_gcl] Error 2


Reproducible: Always




root@grizzly:/root(19)# emerge --info
Portage 2.1.3.7 (default-linux/amd64/2007.0, gcc-4.2.0, glibc-2.6.1-r0,
2.6.22-gentoo-r5 x86_64)
=================================================================
System uname: 2.6.22-gentoo-r5 x86_64 AMD Athlon(tm) 64 Processor 3200+
Gentoo Base System release 1.12.10
Timestamp of tree: Wed, 29 Aug 2007 03:30:09 +0000
distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632)
[disabled]
ccache version 2.4 [disabled]
app-shells/bash:     3.2_p17-r1
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.4-r5, 2.5.1-r2
dev-python/pycrypto: 2.0.1-r6
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 1.12.10-r4
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17.50.0.18
sys-devel/gcc-config: 1.4.0-r1
sys-devel/libtool:   1.5.24
virtual/os-headers:  2.6.22-r2
ACCEPT_KEYWORDS="amd64 ~amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=k8"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf
/etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/
/etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo
/etc/texmf/web2c"
CXXFLAGS="-O2 -march=k8"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks fixpackages metadata-transfer sandbox sfperms strict
unmerge-orphans userfetch"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror
http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/
rsync://ftp.fi.muni.cz/pub/linux/gentoo
ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo
ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo
ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/
"
LINGUAS="de fr"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages
--filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/science /usr/local/portage
/usr/local/portage/xeffects/trunk /usr/local/portage/xeffects/experimental
/usr/local/sci"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X Xaw3d a52 aac acl acpi aiglx alsa amd64 amrr ao aotuv
apache2 asf atlas auctex audacious audiofile automount bash-completion beagle
berkdb bitmap-fonts blas bluetooth bonobo boo bzip2 cairo cdda cddb cdio
cdparanoia cdr cgi chm cli corba cracklib crypt cups curl daap dbus
device-mapper dga divx dlloader dmi dri dv dvb dvd dvdr dvi dxr3 dynagraph
effects elf emacs emboss encode epiphany esd evo evolution examples exif expat
fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx galago gdal
gdbm geos gif gimp gimpprint ginac glade glitz gml gmp gnome gnuplot gnutls
gphoto2 gpm graphviz grass gs gsl gsm gstreamer gtk guile hal hddtemp hdf hdf5
hlapi iconv icq id3 imagemagick innodb ipv6 isdnlog ithreads jabber java jbig
john jp2 jpeg jpeg2k kexi ladspa lame lapack latex lcms ldap libgda
libsamplerate lirc lm_sensors lua lzo lzw mad math matroska midi mmx mmxext mng
mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4live mpeg mpeg2
mplayer mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf network
nfs nls nntp nptl nptlonly ntfs numarray numeric ocaml octave odbc ogdi ogg ole
opengl openmp pae pam pcre pdf perl plotutils png posix postgres pppd
preview-latex proj python qhull quicktime readline reflection reiserfs
rhythmbox rle rrdcgi rrdtool samba sdl session slang slp sndfile snmp sox speex
spell spl sqlite sse sse2 ssl subtitles svg t1lib tcltk tcpd tetex theora
threads thunderbird tidy tiff tk truetype truetype-fonts type1-fonts unicode
userlocales utempter v4l2 vorbis wmf xattr xemacs xext xine xml xmlreader
xmlrpc xorg xpm xv xvid xvmc zlib zvbi" ALSA_CARDS="ali5451 als4000 atiixp
atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801
hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem
ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug
file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate
route share shm softvol" DVB_CARDS="tda10046 saa7134" ELIBC="glibc"
INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr"
LIRC_DEVICES="hauppauge_dvb" USERLAND="GNU" VIDEO_CARDS="radeon vesa fbdev"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

------- Comment #1 From Panagiotis Christopoulos 2007-08-30 08:54:25 0000 ------- 
Created an attachment (id=129605) [details]
proposed gcl diff

This gcl version, is based on debian's gcl_2.6.7-32 package. The guys there,
have made a new diff, gcl_2.6.7-34.diff.gz, I patched the debian's
gcl_2.6.7.orig.tar.gz with that diff, and compiled flawlessly on my amd64
box(when I patched with the older gcl_2.6.7-34.diff, I came to the same bug ->
"Lisp initialization failed" etc.) I haven't managed to test that new version
on other arches, but maybe it would be a nice idea to migrate to an ebuild
based on gcl_2.6.7-34, globally, or only for amd64 arch. Of course, maybe I'm
thinking something wrong. 

The proposed diff only changes the DEB_PV variable from 32 to 34, and I haven't
studied yet the behaviour this change has, to the other
patches(dev-lisp/gcl/files/*)

------- Comment #2 From Panagiotis Christopoulos 2007-08-30 08:56:14 0000 ------- 
<<<< box(when I patched with the older gcl_2.6.7-34.diff, I came to the same
bug 
>>>> box(when I patched with the older gcl_2.6.7-32.diff, I came to the same bug

------- Comment #3 From Panagiotis Christopoulos 2007-08-30 09:03:34 0000 ------- 
Created an attachment (id=129606) [details]
My build.log based on *-34 diff

debian url's:

http://packages.debian.org/unstable/interpreters/gcl.html
http://packages.qa.debian.org/g/gcl.html

------- Comment #4 From Juergen Rose 2007-08-30 10:37:19 0000 ------- 
The patch worked for me. I could again install gcl-2.6.7-r2.  It is installed
under /usr/lib/gcl-2.6.8!

But similar as before of the patch maxima-5.13.0 fails to install, now with:
test -d binary-gcl/numerical/slatec || mkdir binary-gcl/numerical/slatec
gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp")
(compiler::emit-fn t) (funcall (intern (symbol-name :operate-on-system) :mk)
"maxima" :compile :verbose t) (compiler::make-all-proclaims "*/*.fn"
"*/*/*/*.fn"))' && \
        gcl -batch -eval '(progn (load "../lisp-utils/defsystem.lisp") (funcall
(intern (symbol-name :operate-on-system) :mk) "maxima" :load :verbose t) (when
(fboundp (quote si::sgc-on))(si::sgc-on t)) (si:save-system
"binary-gcl/maxima"))'

Warning:
REQUIRE is being redefined.
Error in PROGN [or a callee]: Can't open file
"/usr/lib/gcl-2.6.8/xgcl-2/../cmpnew/gcl_collectfn.data"

Fast links are on: do (use-fast-links nil) for debugging
Broken at PROGN.  Type :H for Help.


This maxima install error is not specific to x86_64 it also happens for
old i686 systems and it not happens for every x86_64 system.

    Regards Juergen

------- Comment #5 From Marijn Schouten 2007-08-31 11:13:29 0000 ------- 
Thanks Panagiotos, should be fixed in r3.

------- Comment #6 From Andrey Grozin 2007-09-04 10:47:43 0000 ------- 
gcl-2.6.7-r3 fails for me (r2 was OK, and maxima-5.13.0 from the science
overlay emerged fine with r2). The error message is

GCL (GNU Common Lisp)  2.6.8 ANSI    Sep  5 2007 00:25:22
Source License: LGPL(gcl,gmp), GPL(unexec,bfd,xgcl)
Binary License:  GPL due to GPL'ed components: (XGCL READLINE BFD UNEXEC)
Modifications of this banner must retain notice of a compatible license
Dedicated to the memory of W. Schelter

Use (help) to get some basic information on how to use GCL.
Temporary directory for compiler files set to
/var/tmp/portage/dev-lisp/gcl-2.6.7-r3/temp/

>
NIL

>/bin/sh: line 3:  4790 Done                    echo '(reset-sys-paths "/usr/lib/gcl-2.6.8/")(si::save-system "saved_ansi_gcl")'
      4791 Segmentation fault      | ./temp
make[1]: *** [install1] Error 139
make[1]: Leaving directory
`/var/tmp/portage/dev-lisp/gcl-2.6.7-r3/work/gcl-2.6.7'
make: *** [install] Error 2

My emerge --info follows:

Portage 2.1.2.12 (default-linux/x86/2006.1/desktop, gcc-4.1.2, glibc-2.5-r4,
2.6.22-suspend2-r1 i686)
=================================================================
System uname: 2.6.22-suspend2-r1 i686 Intel(R) Pentium(R) M processor 1400MHz
Gentoo Base System release 1.12.9
Timestamp of tree: Tue, 04 Sep 2007 02:20:01 +0000
app-shells/bash:     3.2_p17
dev-java/java-config: 1.2.11-r1
dev-lang/python:     2.4.4-r4
dev-python/pycrypto: 2.0.1-r6
sys-apps/baselayout: 1.12.9-r2
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.16
sys-devel/libtool:   1.5.24
virtual/os-headers:  2.6.21
ACCEPT_KEYWORDS="x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium-m"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config
/usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo
/etc/texmf/web2c"
CXXFLAGS="-O2 -march=pentium-m"
DISTDIR="/usr/portage/distfiles"
FEATURES="distlocks metadata-transfer parallel-fetch sandbox sfperms strict"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo
ftp://linux.rz.ruhr-uni-bochum.de/gentoo-mirror/
ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo
ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo
ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo
ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/
ftp://ftp.rz.tu-bs.de/pub/mirror/ftp.gentoo.org/gentoo-distfiles/"
LINGUAS="ru"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress
--force --whole-file --delete --delete-after --stats --timeout=180
--exclude=/distfiles --exclude=/local --exclude=/packages
--filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/sci"
SYNC="rsync://linux.rz.ruhr-uni-bochum.de/gentoo-portage/"
USE="X aac acpi alsa arts bash-completion berkdb bitmap-fonts blas boehm-gc
browserplugin cairo cdr cli cracklib crypt css cups curl dbus doc dri dvd dvdr
dvdread eds emacs emboss encode esd fam ffmpeg fftw firefox fltk fortran gd
gdbm gif gmp gnome gpm gsl gstreamer gtk hal iconv imagemagick isdnlog jpeg kde
lapack ldap leim mad midi mikmod mozilla mp3 mpeg mudflap mule ncurses nls nptl
nptlonly nsplugin offensive ogg opengl openmp oss pam pcre pdf perl plotutils
png ppds pppd python qt3 qt4 quicktime readline reflection sdl session speex
spell spl ssl tcl tcpd tetex tk truetype truetype-fonts type1-fonts umfpack
unicode vcd vorbis win32codecs wxwindows x86 xine xml xorg xv xvid zlib"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1
emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m
maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file
hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route
share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses
text" LINGUAS="ru" USERLAND="GNU" VIDEO_CARDS="i810 vesa fbdev"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS,
MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

------- Comment #7 From Marijn Schouten 2007-09-04 11:14:58 0000 ------- 
Andrey, see bug 190950