Bug 136206

Summary:	Installation of asn2all in ncbi-tools
Product:	Gentoo Linux	Reporter:	José María Fernández González <josemariafg>
Component:	New packages	Assignee:	Olivier Fisette (RETIRED) <ribosome>
Status:	RESOLVED FIXED
Severity:	enhancement	CC:	sci
Priority:	High
Version:	2006.0
Hardware:	All
OS:	All
URL:	http://www.ncbi.nlm.nih.gov/Web/Newsltr/V14N1/toolkit
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	Ebuild which allows compilation and installation of asn2all Patch to enable asn2all compilation

Description José María Fernández González 2006-06-09 09:08:33 UTC

asn2all is a very versatile application which translates NCBI sequence databases (GenBank, RefSeq) in ASN.1 format (both binary and text ones) to many others (GenBank, FASTA, TinySet XML, INSDSet XML, binary or text ASN.1 and XML).

This program is included inside ncbi-tools package, but it is not compiled and installed by default.

Comment 1 José María Fernández González 2006-06-09 09:10:29 UTC

Created attachment 88776 [details]
Ebuild which allows compilation and installation of asn2all

This ebuild is based on the publicly available one, and it only patches the ncbi-package in order to get asn2all compiled/installed.

Comment 2 José María Fernández González 2006-06-09 09:13:29 UTC

Created attachment 88777 [details, diff]
Patch to enable asn2all compilation

This patch is used by the previously submitted ebuild, and it enables asn2all compilation

Comment 3 Jakub Moc (RETIRED) gentoo-dev

2006-06-09 09:20:54 UTC

Please, dont' restrict bugs without any reason.

Comment 4 Olivier Fisette (RETIRED) gentoo-dev

2006-06-26 10:27:20 UTC

Thanks for the suggestion, Jos

Comment 5 Olivier Fisette (RETIRED) gentoo-dev

2006-06-26 10:27:20 UTC

Thanks for the suggestion, José. I just updated the NCBI tools in Portage to version 20060507, and added your patch.