Bug 11617 - biopython ebuild
Bug#: 11617 Product:  Gentoo Linux Version: unspecified Platform: x86
OS/Version: Linux Status: RESOLVED Severity: enhancement Priority: P2
Resolution: FIXED Assigned To: george@gentoo.org Reported By: daniel@jaeggi.co.uk
Component: Ebuilds
URL: 
Summary: biopython ebuild
Keywords:  
Status Whiteboard: 
Opened: 2002-12-05 05:31 0000
Description:   Opened: 2002-12-05 05:31 0000 
Hi 

biopython is a collection of python modules for computational molecular biology
(as a complement to bioperl). Homepage is at www.biopython.org

I haven't found an ebuild for it so I wrote one quickly - It's pretty
straightforward!

it depends on dev-python/Numeric /ReportLab /egenix-mx-base 

Thanks

Dan

------- Comment #1 From Daniel Jaeggi 2002-12-05 05:32:48 0000 ------- 
Created an attachment (id=6220) [details]
biopython ebuild

------- Comment #2 From Daniel Jaeggi 2002-12-05 05:37:54 0000 ------- 
Created an attachment (id=6221) [details]
biopython ebuild

Doh - forgot to comment out the "setup.py test" line. This produces a graphical
windows with some installation test results and probably isn't suitable for
inclusion in an ebuild in its current form.

------- Comment #3 From Daniel Jaeggi 2002-12-09 04:29:39 0000 ------- 
Created an attachment (id=6332) [details]
biopython ebuild with test step GUI disabled

Uncommented the test line with the addition of a flag to prevent the graphical
display of the test results.

------- Comment #4 From George Shapovalov 2003-01-04 23:43:07 0000 ------- 
Hi Daniel

Thank you for your submission!
Unfortunately you did not give the full name of the ebuild (specifically - you
are missing the PV part) and I cannot guess version number from anything you
included. Without this information the ebuild is not functional. Could you
please fix that?

George

------- Comment #5 From Daniel Jaeggi 2003-01-09 08:20:04 0000 ------- 
Created an attachment (id=7129) [details]
biopython-1.10.ebuild

Sorry about that. 

The version number is 1.10.

Hope that's all the information you need?!

Daniel

------- Comment #6 From George Shapovalov 2003-02-18 16:11:06 0000 ------- 
Hi Daniel.

Thanks for the update.
I have processed the ebuild and committed it. PLease test.
(Please close the bug with RESOLVE/FIXED upon sccessful testing, or reopen otherwise).

BTW, setup.py would not recognise --no-gui option, therefore I disabled tests.

George