Bug 11498 – New bioperl-1.0.2.ebuild w/ new dependencies

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Gontran Zepeda 2002-12-02 15:00:31 UTC]

I'm pretty excited about this ebuild.  I track the bioperl project listserve and
use it for my work, however I'm not a developer there.  I would, however, be
happy to maintain this ebuild (and the bioperl-cvs version) for the next few years.

May be some formatting issues or something about perl*.eclasses that I didn't
grok.  Do let me know and I can fixup.

thx,
Gontran

[Comment 1 Gontran Zepeda 2002-12-02 15:01:47 UTC]

Created attachment 6140 [details]
current stable bioperl-live

[Comment 2 Gontran Zepeda 2002-12-02 15:03:02 UTC]

Created attachment 6141 [details]
File-Temp-0.12.ebuild

[Comment 3 Gontran Zepeda 2002-12-02 15:03:42 UTC]

Created attachment 6142 [details]
Graph-0.20101.ebuild

for bioperl-cvs

[Comment 4 Gontran Zepeda 2002-12-02 15:04:16 UTC]

Created attachment 6143 [details]
Heap-0.50.ebuild

dep for Graph

[Comment 5 Gontran Zepeda 2002-12-02 15:04:48 UTC]

Created attachment 6144 [details]
SOAP-Lite-0.55.ebuild

[Comment 6 Gontran Zepeda 2002-12-02 15:05:45 UTC]

Created attachment 6145 [details]
Text-Shellwords-1.00.ebuild

Lincoln Stein's Text-Shellwords, needed for -cvs, used in stable.

[Comment 7 Gontran Zepeda 2002-12-02 15:06:31 UTC]

Created attachment 6146 [details]
XML-Twig-3.09.ebuild

dep for stable and -cvs.

[Comment 8 Gontran Zepeda 2002-12-02 15:07:31 UTC]

Created attachment 6147 [details]
bioperl-cvs-20021202.ebuild

bioperl-cvs ebuild which depends on cvs.ebuild patch submitted in #11497

[Comment 9 Gontran Zepeda 2002-12-02 15:09:08 UTC]

Created attachment 6148 [details]
bioperl-1.0.2.ebuild

properly named and mimed, obsoletes attachment 6140 [details].

[Comment 10 Gontran Zepeda 2002-12-05 09:56:46 UTC]

Another reason bioperl-cvs is useful:  On the bioperl-l list, after describing a
problem with the bioperl code, it is not rare that users are told to upgrade to
current CVS -- new "stable" releases are generally obsolete in 1-2 months and
new releases are about every 6.

Cheers,
Gontran

[Comment 11 Michael Cummings (RETIRED) 2002-12-17 11:44:19 UTC]

Gontran,

this is not forgotten. Unfortunately, problem tickets have taken presidence 
over enhancement tickets for the last week.

[Comment 12 Michael Cummings (RETIRED) 2002-12-21 20:11:33 UTC]

missing dep for MIME-Lite in SOAP-LITE ebuild, adding

[Comment 13 Michael Cummings (RETIRED) 2002-12-22 10:05:14 UTC]

This is now masked in portage. I can't unmask it until the expat version you
require is unmasked since bioperl's deps cannot be fulfilled otherwise.

[Comment 14 Michael Cummings (RETIRED) 2002-12-22 10:49:09 UTC]

will keep an eye out for the deps to unmask, otherwise this is done