Bug 11498 - New bioperl-1.0.2.ebuild w/ new dependencies
Bug#: 11498 Product:  Gentoo Linux Version: unspecified Platform: All
OS/Version: Linux Status: RESOLVED Severity: enhancement Priority: P2
Resolution: FIXED Assigned To: mcummings@gentoo.org Reported By: gontran@gontran.net
Component: Ebuilds
URL: 
Summary: New bioperl-1.0.2.ebuild w/ new dependencies
Keywords:  
Status Whiteboard: 
Opened: 2002-12-02 15:00 0000
Description:   Opened: 2002-12-02 15:00 0000 
I'm pretty excited about this ebuild.  I track the bioperl project listserve
and
use it for my work, however I'm not a developer there.  I would, however, be
happy to maintain this ebuild (and the bioperl-cvs version) for the next few
years.

May be some formatting issues or something about perl*.eclasses that I didn't
grok.  Do let me know and I can fixup.

thx,
Gontran

------- Comment #1 From Gontran Zepeda 2002-12-02 15:01:47 0000 ------- 
Created an attachment (id=6140) [details]
current stable bioperl-live

------- Comment #2 From Gontran Zepeda 2002-12-02 15:03:02 0000 ------- 
Created an attachment (id=6141) [details]
File-Temp-0.12.ebuild

------- Comment #3 From Gontran Zepeda 2002-12-02 15:03:42 0000 ------- 
Created an attachment (id=6142) [details]
Graph-0.20101.ebuild

for bioperl-cvs

------- Comment #4 From Gontran Zepeda 2002-12-02 15:04:16 0000 ------- 
Created an attachment (id=6143) [details]
Heap-0.50.ebuild

dep for Graph

------- Comment #5 From Gontran Zepeda 2002-12-02 15:04:48 0000 ------- 
Created an attachment (id=6144) [details]
SOAP-Lite-0.55.ebuild

------- Comment #6 From Gontran Zepeda 2002-12-02 15:05:45 0000 ------- 
Created an attachment (id=6145) [details]
Text-Shellwords-1.00.ebuild

Lincoln Stein's Text-Shellwords, needed for -cvs, used in stable.

------- Comment #7 From Gontran Zepeda 2002-12-02 15:06:31 0000 ------- 
Created an attachment (id=6146) [details]
XML-Twig-3.09.ebuild

dep for stable and -cvs.

------- Comment #8 From Gontran Zepeda 2002-12-02 15:07:31 0000 ------- 
Created an attachment (id=6147) [details]
bioperl-cvs-20021202.ebuild

bioperl-cvs ebuild which depends on cvs.ebuild patch submitted in #11497

------- Comment #9 From Gontran Zepeda 2002-12-02 15:09:08 0000 ------- 
Created an attachment (id=6148) [details]
bioperl-1.0.2.ebuild

properly named and mimed, obsoletes attachment 6140 [details].

------- Comment #10 From Gontran Zepeda 2002-12-05 09:56:46 0000 ------- 
Another reason bioperl-cvs is useful:  On the bioperl-l list, after describing
a
problem with the bioperl code, it is not rare that users are told to upgrade to
current CVS -- new "stable" releases are generally obsolete in 1-2 months and
new releases are about every 6.

Cheers,
Gontran

------- Comment #11 From Michael Cummings (RETIRED) 2002-12-17 11:44:19 0000 ------- 
Gontran,

this is not forgotten. Unfortunately, problem tickets have taken presidence 
over enhancement tickets for the last week.

------- Comment #12 From Michael Cummings (RETIRED) 2002-12-21 20:11:33 0000 ------- 
missing dep for MIME-Lite in SOAP-LITE ebuild, adding

------- Comment #13 From Michael Cummings (RETIRED) 2002-12-22 10:05:14 0000 ------- 
This is now masked in portage. I can't unmask it until the expat version you
require is unmasked since bioperl's deps cannot be fulfilled otherwise.

------- Comment #14 From Michael Cummings (RETIRED) 2002-12-22 10:49:09 0000 ------- 
will keep an eye out for the deps to unmask, otherwise this is done