93095 2005-05-18 12:48 0000 sci-visualization/scigraphica-2.1 version bump 2006-12-17 23:38:31 0000 1 1 1 Unclassified Gentoo Linux Ebuilds unspecified All All RESOLVED FIXED P2 enhancement --- 102872 154102 1 bughunter@jankoh.dyndns.org sci@gentoo.org basic@mozdev.org cloos@jhcloos.com f.r.bissey@massey.ac.nz gentoobugs@blamey.me.uk grozin@gentoo.org jlp.bugs@gmail.com pdenapo@gmail.com smustudent1@yahoo.com ysharma@catprosystems.com bughunter@jankoh.dyndns.org 2005-05-18 12:48:03 0000 There is a new version of scigraphgica out. I don't know who is responsible for for adding a new ebuild for this version (in portage fron yesterday there is only version 0.8.0-r2. If nobody is responsible or has time and noone minds against this one I could try to make an ebuild myself and post it here as I really like to have version 2.0.0 in portage. Please comment. Best regards Jan Reproducible: Didn't try Steps to Reproduce: bughunter@jankoh.dyndns.org 2005-05-18 12:50:43 0000 SORRY: I meant media-gfx/scigraphica. Changed summary. Best regards Jan pdenapo@gmail.com 2005-05-20 19:04:48 0000 This package depends on x11-libs/gtk+extra-2.0.0 I'm contributing an ebuild for this library (see bug #65354 ) I'll see if I can create an ebuild for scigraphica also pdenapo@gmail.com 2005-05-20 19:07:44 0000 I think that he curren classification in portage is not correct, as it is clearly a scientific application (shouldn't be in sci-mathematics or in sci-misc?) pdenapo@gmail.com 2005-05-20 20:39:44 0000 Created an attachment (id=59426) libscigraphica-2.0.0.ebuild An ebuild for libscigraphica pdenapo@gmail.com 2005-05-20 20:41:02 0000 Created an attachment (id=59427) scigraphica-2.0.0.ebuild an ebuild for scigraphica-2.0.0 pdenapo@gmail.com 2005-05-20 20:46:04 0000 I'm submitting an ebuild for libscigraphica and scigraphica. They DON'T WORK right now, they are just an starting point (but I don't want you to make the work twice) Actually scigraphica and libscigraphica are built by these ebuilds, however scigraphica is not able to find the python modules It display the following messages when I run it in an xterm: Importing python module: pickle Importing python module: gtk ImportError: No module named gtk Importing python module: Numeric ImportError: No module named Numeric Importing python module: sys Importing python module: pysga ImportError: No module named pysga Importing python module: os any help is wellcome! I have tried to figure out the dependencies by reading the configure.in files but I'm not so sure about them. Please check. One final note: the gnome and bonobo support seem to be gone in this release. bughunter@jankoh.dyndns.org 2005-05-20 22:20:58 0000 I also created all tree ebuilds and after deleting the old .scigraphica dir it seems to work. But I also get an error: It claims it cannot find numarray... I can try to make some diffs between yours and mine files if you like. Best regards Jan bughunter@jankoh.dyndns.org 2005-05-20 22:27:11 0000 Just changed dependencies of libscigraphica from dev-python/numeric to dev/python/numarray. I installed numarray and it works like a charm. If I should upload my files or create diffs just let me know. @Pablo: Try to rm/rename your old scigraphica config-dir, this should do the trick. Best regards Jan pdenapo@gmail.com 2005-05-21 07:11:44 0000 After deleting the .scigraphica dir the ebuilds did work. Thanks! I'm not having problems with loading numarray (the ebuilds actually depend of numarray) Jan: It would be nice if you could check if there are any differencies between your ebuilds and mine, so that we fix any remaning problem. I think that we should try to merge our work. One thing that obviusly should be changed is the descripci pdenapo@gmail.com 2005-05-21 07:11:44 0000 After deleting the .scigraphica dir the ebuilds did work. Thanks! I'm not having problems with loading numarray (the ebuilds actually depend of numarray) Jan: It would be nice if you could check if there are any differencies between your ebuilds and mine, so that we fix any remaning problem. I think that we should try to merge our work. One thing that obviusly should be changed is the descripción of libscigraphica in my ebuild. (I forgot that) A problem that remains is that scigraphica segfaults when exiting! (this seems to be a bug in the program) pdenapo@gmail.com 2005-05-21 07:14:51 0000 Created an attachment (id=59457) libscigraphica-2.0.0.ebuild (fixed description) Just changed the description bughunter@jankoh.dyndns.org 2005-05-21 09:29:15 0000 > A problem that remains is that scigraphica segfaults when exiting! > (this seems to be a bug in the program) It does not for me. Could you please provide any kind of backtrace? I could report it upstream to sg-devel, as I read the list since many years. There seems also to be a bug with pango-UTF8 things and I don't seem to be able to open old sg-files (maybe that two things are related, I will investigate). Another problem is, that the configure-script does not seem to be able to detect numarray correctly. No problem at our site, but I will look at this and report upstream. Best regards Jan bughunter@jankoh.dyndns.org 2005-05-21 09:47:46 0000 > Jan: It would be nice if you could check if there are any differencies > between your ebuilds and mine, so that we fix any remaning > problem. I think that we should try to merge our work. Just created some diffs. SRC_URI differs, but if your SRC_URI works, it' surely better than mine, as I just used a mirror at my local region. > One thing that obviusly should be changed is the descripci bughunter@jankoh.dyndns.org 2005-05-21 09:47:46 0000 > Jan: It would be nice if you could check if there are any differencies > between your ebuilds and mine, so that we fix any remaning > problem. I think that we should try to merge our work. Just created some diffs. SRC_URI differs, but if your SRC_URI works, it' surely better than mine, as I just used a mirror at my local region. > One thing that obviusly should be changed is the descripción > of libscigraphica in my ebuild. > (I forgot that) That's great, also forgot that. AFAIK there is no active gnome support at this time, so I think, the IUSE="gnome" could be changed my way. One thing I changed was DEPENDS of scigraphica, as all dependencies are cached by the lib, the only thing remains in sg, is the lib itself (but better with =, as in your ebuild). Also, is there really a dependency on imlib and intltool? It seems configure would not check it. I also have a scr_unpack() funktion, but I think this is an error at my site (those were the first ebuilds I wrote). The last thing is I have pkg_postinstall with the warning to delete the old configuration, as this would be surely the first bugreport on that package. I'll send the diffs immediatly. Best reagdars Jan bughunter@jankoh.dyndns.org 2005-05-21 09:48:45 0000 Created an attachment (id=59465) diff between my and Pablos ebuild bughunter@jankoh.dyndns.org 2005-05-21 09:50:41 0000 Created an attachment (id=59466) diff between my and Pablos scigraphica ebuild smustudent1@yahoo.com 2005-06-13 06:00:00 0000 Anybody else seen a complaint from arrayobject.h not found? It's a library in numeric - I had to symlink it to /usr/include/arrayobject.h before the build process would find it. In /usr/include/python2.3/Numeric/ it apparently isn't spotted? smustudent1@yahoo.com 2005-06-13 06:04:40 0000 Nuts - libscigraphica build bottomed out again. Anybody have any ideas? In file included from /usr/include/python2.3/Python.h:8, from sg_python_expr.c:26: /usr/include/python2.3/pyconfig.h:856:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/limits.h:26, from /usr/lib/gcc/i686-pc-linux-gnu/3.4.3-20050110/include/limits.h:122, from /usr/lib/gcc/i686-pc-linux-gnu/3.4.3-20050110/include/syslimits.h:7, from /usr/lib/gcc/i686-pc-linux-gnu/3.4.3-20050110/include/limits.h:11, from /usr/lib/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:30, from /usr/include/glib-2.0/glib/galloca.h:30, from /usr/include/glib-2.0/glib.h:30, from /usr/include/gtk-2.0/gdk/gdktypes.h:32, from /usr/include/gtk-2.0/gdk/gdkcolor.h:4, from /usr/include/gtk-2.0/gdk/gdk.h:30, from sg_python_expr.c:19: /usr/include/features.h:190:1: warning: this is the location of the previous definition sg_python_expr.c: In function `sg_eval_expr_double': sg_python_expr.c:133: warning: unused variable `parray' sg_python_expr.c:134: warning: unused variable `apt' sg_python_expr.c:136: warning: unused variable `retarray' sg_python_expr.c: At top level: sg_python_expr.c:130: warning: unused parameter 'expect' sg_python_expr.c: In function `sg_eval_expr_double': sg_python_expr.c:213: warning: control reaches end of non-void function sg_python_expr.c: At top level: sg_python_expr.c:214: warning: type defaults to `int' in declaration of `len' sg_python_expr.c:214: error: `expect' undeclared here (not in a function) sg_python_expr.c:214: error: `array' undeclared here (not in a function) sg_python_expr.c:214: warning: data definition has no type or storage class sg_python_expr.c:215: error: parse error before "if" sg_python_expr.c:218: error: parse error before '&' token sg_python_expr.c:218: warning: type defaults to `int' in declaration of `g_array_append_vals' sg_python_expr.c:218: error: conflicting types for 'g_array_append_vals' /usr/include/glib-2.0/glib/garray.h:77: error: previous declaration of 'g_array_append_vals' was here sg_python_expr.c:218: error: conflicting types for 'g_array_append_vals' /usr/include/glib-2.0/glib/garray.h:77: error: previous declaration of 'g_array_append_vals' was here sg_python_expr.c:220: warning: type defaults to `int' in declaration of `retarray' sg_python_expr.c:220: warning: data definition has no type or storage class sg_python_expr.c:221: warning: type defaults to `int' in declaration of `num' sg_python_expr.c:221: warning: data definition has no type or storage class sg_python_expr.c:222: error: parse error before '(' token make[3]: *** [sg_python_expr.lo] Error 1 make[3]: Leaving directory `/var/tmp/portage/libscigraphica-2.0.0/work/libscigraphica-2.0.0/scigraphica' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/var/tmp/portage/libscigraphica-2.0.0/work/libscigraphica-2.0.0/scigraphica' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/libscigraphica-2.0.0/work/libscigraphica-2.0.0' make: *** [all] Error 2 bughunter@jankoh.dyndns.org 2005-06-13 14:43:58 0000 (In reply to comment #15) > Anybody else seen a complaint from arrayobject.h not found? It's a library in > numeric - I had to symlink it to /usr/include/arrayobject.h before the build > process would find it. In /usr/include/python2.3/Numeric/ it apparently isn't > spotted? Look in the archives of scigraphica-devel mailing list. Adrian had some problems, because newer versions of numarray weren't catched correctly; also your other described error could be spotted by this. Adrian changed depedency back to Numeric. Are you sure to use Numeric instead of nummarray? Maybe having Numeric *and* nummarry installed? Waiting for comments, I will report upstream. Best regards Jan bughunter@jankoh.dyndns.org 2005-06-13 14:47:34 0000 Created an attachment (id=61171) Patch to get the correct version of sg in the "scigraphuica --version" dialog This patch fixes a small error in configure.in, which precents sg to give the correct version with the command "scigraphica --version" It is tested on my system and worked. Just applied it and afterwards libtoolize --force && aclocal && autoconf && autoheader && automake Then the well known ./configure && make && make install ;) Best regards Jan dberkholz@gentoo.org 2005-07-25 02:31:42 0000 How are these ebuilds working? Are they about ready to go in, for 2.1.0? bughunter@jankoh.dyndns.org 2005-07-25 12:57:00 0000 > How are these ebuilds working? Are they about ready to go in, for 2.1.0? I'll have a look at it ASAP, also concerning 2.1.0, hopefully get new finished ebuilds for minimum ~x86 at the end of this week... Best regards Jan smustudent1@yahoo.com 2005-07-27 18:15:14 0000 Error on the 2.1.0 side when installing libscigraphica: ../../pixmaps -I../../scigraphica -I../../scigraphica/dialogs -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/usr/include/gtkextra-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/usr/include/python2.4 -march=athlon-xp -O3 -pipe -g -O -W -Wall -DWITH_WARNINGS -MT sg_entry.lo -MD -MP -MF ".deps/sg_entry.Tpo" \ -c -o sg_entry.lo `test -f 'sg_entry.c' || echo './'`sg_entry.c; \ then mv -f ".deps/sg_entry.Tpo" ".deps/sg_entry.Plo"; \ else rm -f ".deps/sg_entry.Tpo"; exit 1; \ fi In file included from ../../scigraphica/sg.h:44, from sg_dialog.c:21: ../../scigraphica/sg_python.h:35:25: arrayobject.h: No such file or directory sg_dialog.c:48: warning: unused parameter 'dialog' sg_dialog.c:56: warning: unused parameter 'dialog' sg_dialog.c:57: warning: unused parameter 'event' sg_dialog.c:68: warning: unused parameter 'dialog' sg_dialog.c:248: warning: unused parameter 'button' sg_dialog.c:256: warning: unused parameter 'button' sg_dialog.c:264: warning: unused parameter 'button' sg_dialog.c:272: warning: unused parameter 'button' sg_dialog.c:280: warning: unused parameter 'button' sg_dialog.c:273: warning: 'button_clicked_apply' defined but not used make[3]: *** [sg_dialog.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... I have numeric installed, so I don't know quite what's going on here... smustudent1@yahoo.com 2005-07-27 18:17:11 0000 Oh, I see - for some weird reason the include file are in python2.3??? This is a brand new gentoo install, how could that have happened? f.r.bissey@massey.ac.nz 2005-08-04 21:51:39 0000 Hi, I have tried the scigraphica ebuild that is in portage and I am quite interested in testing an ebuild for the new version (0.8.0 segfault on me each time I tried to plot a 2nd 3D graph). I can test for both ppc (my work machine) and x86 (home machine). Where could I get an ebuild without dealing with working which patch goes where and which one should be applied from the bug list? ribosome@gentoo.org 2005-08-05 07:17:49 0000 Hi Francois, Since it's not in Portage yet, you need to download the ebuilds from Bugzilla and place them in a Portage overlay on your system, applying all the necessary patches. See the Gentoo Handbook for more details. f.r.bissey@massey.ac.nz 2005-08-05 21:54:50 0000 (In reply to comment #24) > Hi Francois, > > Since it's not in Portage yet, you need to download the ebuilds from Bugzilla > and place them in a Portage overlay on your system, applying all the necessary > patches. See the Gentoo Handbook for more details. Yes if it had been in portage I would have had a go at it already, I was hoping to bypass the patching pain :p (to me), and working out which patches are the necessary ones. I guess I will give it a go on Monday. f.r.bissey@massey.ac.nz 2005-08-07 01:55:18 0000 (In reply to comment #2) > This package depends on x11-libs/gtk+extra-2.0.0 > I'm contributing an ebuild for this library > (see bug #65354 ) > I'll see if I can create an ebuild for scigraphica > also This is a bug for an ebuild of pygsl not gtk+extra. The correct bug is #93394 :) . Should we make the present bug depend on your gtk+extra bug Pablo? bughunter@jankoh.dyndns.org 2005-08-17 10:06:55 0000 Sorry for the last response: Much too less time in the last weeks. ;) I created new ebuild for the new versions: gtkextra-2.1.1, libscigraphica-2.1.1 and scigraphica-2.1.0 However, there is still one known problem, which I worked around building a new ebuild pygtk-2.6.1-r1 using numarray instead of numeric. The ebuilds all work fine (at least on my system), but I don't know if there are any side effects by the new pygtk ebuild or if numarray is even used by the new ebuild. BTW: Could somebody point this one to the pygtk maintainer? It is needed to be checked. Best regards Jan bughunter@jankoh.dyndns.org 2005-08-17 10:08:15 0000 Created an attachment (id=66151) Ebuild for new libscigraphica bughunter@jankoh.dyndns.org 2005-08-17 10:09:37 0000 Created an attachment (id=66152) Ebuild for new scigraphica-2.1.0 bughunter@jankoh.dyndns.org 2005-08-17 10:11:01 0000 Created an attachment (id=66153) New configure.in.patch for sg-version 2.1.0 bughunter@jankoh.dyndns.org 2005-08-17 10:14:57 0000 Created an attachment (id=66154) Ebuild for pygtk as needed by sg-2.1.0 This ebuild is needed by scigraphica-2.1.0.ebuild, could somebody please point this to the correct maintainer to check it? I short: pygtk needs numeric but scigraphica depends on numarray and produces strange build errors if numeric or both packages are installed; but at the same time sg depends on pygtk... bughunter@jankoh.dyndns.org 2005-08-17 10:30:05 0000 Just created a new bug-report with the question concerning pygtk. See: http://bugs.gentoo.org/show_bug.cgi?id=102872 Hopefully somebody can clearify this one... Best regards Jan ysharma@catprosystems.com 2006-01-12 01:31:27 0000 Ran fine but this came at exit: (scigraphica:8914): GLib-GObject-WARNING **: invalid uninstantiatable type `glong' in cast to `GtkWidget' (scigraphica:8914): Gtk-CRITICAL **: gtk_container_remove: assertion `GTK_IS_WIDGET (widget)' failed Segmentation fault bicatali@gentoo.org 2006-05-21 09:04:42 0000 Added scigraphica-2.1.0 and libscigraphica-2.1.1 in the gentoo scientific overlay at http://gentooscience.org. Only slight modifications from the ebuilds proposed here. pygtk was not modified to accomodate numarray, since I have not encountered any problem yet with coexistence of numarray for scigraphica and Numeric for pygtk. I do not used scigraphica, so please test and report in this bug. dberkholz@gentoo.org 2006-05-21 13:11:34 0000 Created an attachment (id=87206) libscigraphica-configure.patch Here's the patch to libscigraphica to fix the case when numarray and numeric are simultaneously installed. dberkholz@gentoo.org 2006-05-21 13:12:29 0000 Created an attachment (id=87207) scigraphica-arrayobject.h.patch Here is the equivalent patch to scigraphica. grozin@gentoo.org 2006-05-25 02:22:18 0000 The ebulds scigraphica-2.1.0 and libscigraphica-2.1.1 (from gentooscience.org) install OK. However, scigraphics always segfaults when I exit from it. bicatali@gentoo.org 2006-06-08 11:04:28 0000 I updated the scigraphica ebuilds in the overlay (see comment #34). It now compiles with gcc-41, and I applied other patches, among which are inspired from spyderous overlay. It still segfaults when exiting (and in other cases as seen in the scigraphica mailing lists). Fixing it does not look obvious. dberkholz@gentoo.org 2006-12-17 23:38:31 0000 Finally in the main tree, thank you all for your patience! 59426 2005-05-20 20:39 0000 libscigraphica-2.0.0.ebuild libscigraphica-2.0.0.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDA1IEdlbnRvbyBGb3VuZGF0aW9uCiMgRGlzdHJpYnV0ZWQgdW5k ZXIgdGhlIHRlcm1zIG9mIHRoZSBHTlUgR2VuZXJhbCBQdWJsaWMgTGljZW5zZSB2MgojICRIZWFk ZXI6IC92YXIvY3Zzcm9vdC9nZW50b28teDg2L21lZGlhLWdmeC9zY2lncmFwaGljYS9zY2lncmFw aGljYS0wLjguMC1yMi5lYnVpbGQsdiAxLjIgMjAwNS8wNS8wOSAxODowNDozNCBkaG9sbSBFeHAg JAoKaW5oZXJpdCBldXRpbHMKCkRFU0NSSVBUSU9OPSJTY2llbnRpZmljIGFwcGxpY2F0aW9uIGZv ciBkYXRhIGFuYWx5c2lzIGFuZCB0ZWNobmljYWwgZ3JhcGhpY3MiClNSQ19VUkk9Im1pcnJvcjov L3NvdXJjZWZvcmdlL3NjaWdyYXBoaWNhLyR7UH0udGFyLmd6IgpIT01FUEFHRT0iaHR0cDovL3Nj aWdyYXBoaWNhLnNvdXJjZWZvcmdlLm5ldC8iCgpMSUNFTlNFPSJHUEwtMiIKU0xPVD0iMCIKS0VZ V09SRFM9Ing4NiB+cHBjIgoKREVQRU5EPSI+PXgxMS1saWJzL2d0aytleHRyYS0yLjAuMAoJPWRl 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