<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
<!DOCTYPE bugzilla SYSTEM "http://bugs.gentoo.org/bugzilla.dtd">

<bugzilla version="2.22.7"
          urlbase="http://bugs.gentoo.org/"
          maintainer="bugzilla@gentoo.org"
>

    <bug>
          <bug_id>75372</bug_id>
          
          <creation_ts>2004-12-22 14:38 0000</creation_ts>
          <short_desc>app-sci - ebuild for axiom-3.0beta</short_desc>
          <delta_ts>2005-12-04 13:44:03 0000</delta_ts>
          <reporter_accessible>1</reporter_accessible>
          <cclist_accessible>1</cclist_accessible>
          <classification_id>1</classification_id>
          <classification>Unclassified</classification>
          <product>Gentoo Linux</product>
          <component>Ebuilds</component>
          <version>unspecified</version>
          <rep_platform>x86</rep_platform>
          <op_sys>Linux</op_sys>
          <bug_status>RESOLVED</bug_status>
          <resolution>FIXED</resolution>
          
          
          
          <priority>P2</priority>
          <bug_severity>enhancement</bug_severity>
          <target_milestone>---</target_milestone>
          
          
          
          <everconfirmed>1</everconfirmed>
          <reporter>smustudent1@yahoo.com</reporter>
          <assigned_to>plasmaroo@gentoo.org</assigned_to>
          <cc>gilles@vonet.lu</cc>
    
    <cc>ngent@ntmm.org</cc>
    
    <cc>pdenapo@gmail.com</cc>
    
    <cc>sci@gentoo.org</cc>
    
    <cc>znmeb@cesmail.net</cc>

      

      
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 14:38:10 0000</bug_when>
            <thetext>This is a (rather basic) ebuild for the beta release of axiom.  Testers be warned this is a long compile.

Reproducible: Always
Steps to Reproduce:</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 14:39:17 0000</bug_when>
            <thetext>Created an attachment (id=46665)
Ebuild for the Axiom computer algebra system
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 14:40:20 0000</bug_when>
            <thetext>Created an attachment (id=46666)
Patch for internal gcl build settings
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 15:08:03 0000</bug_when>
            <thetext>Created an attachment (id=46667)
Opps - I guess that&apos;s 3.0 beta, not 1.0
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 15:08:56 0000</bug_when>
            <thetext>Created an attachment (id=46668)
Path for gcl settings - 3.0, not 1.0
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2004-12-22 15:09:46 0000</bug_when>
            <thetext>Duh - I guess I should read the final release notes.  That&apos;s 3.0beta.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-01-16 06:17:28 0000</bug_when>
            <thetext>RDEPEND=&quot;${DEPEND}&quot;

^^ That&apos;s done by default and against policy...</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-01-16 08:43:03 0000</bug_when>
            <thetext>Ok, I&apos;ve added axiom-9999 which I wrote to CVS in sci-mathematics. If you want to give that a go and confirm it works, that would be very helpful; and if you could base your 3.0_pre20050101 version off it that would also be very helpful... Thanks!</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2005-01-17 05:44:15 0000</bug_when>
            <thetext>Heh. Apologies for posting a not-ready-for-prime-time ebuild.  Your cvs ebuild is very impressive!  I&apos;ve started an emerge - I&apos;ll let you know how it goes.  It gave an initial sandbox error but I don&apos;t know if it matters:

--------------------------- ACCESS VIOLATION SUMMARY ---------------------------
LOG FILE = &quot;/tmp/sandbox-sci-mathematics_-_axiom-9999-15438.log&quot;

mkdir:     /root/.ssh
--------------------------------------------------------------------------------

I think this is just me needing to create a .ssh directory for the root account?

They&apos;ve either added or are about to add a new make target for gentoo to avoid the need for the patch.  I think it&apos;s already in the main GNU-arch archive, but it&apos;s in cvs yet.  Once it is the patch won&apos;t be needed - instead of path/mnt/linux the target becomes path/mnt/gentoo

There&apos;s no point in a 20050101 ebuild - there will be a new, much better release out around the beginning of Feb.  (Graphics, old hypertext browser, etc.)  They&apos;re planning to do a release each month.  I&apos;m not sure which one is/will be &quot;3.0&quot; proper, but I&apos;ll try to find out.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-01-17 08:19:11 0000</bug_when>
            <thetext>Yeah, I know about the montly releases but thought that it would be better to have a snapshot that&apos;s guaranteed to build in Portage rather than the current CVS ebuild which has working sman but may break at any moment (HyperText is still to come, I guess, at least it&apos;s not here yet as of when I built it here yesterday).

The violation summary: not sure where that&apos;s coming from... Since it has the name sci-mathematics in it seems that it&apos;s probably caused by a Portage bug of some sort, hrm.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2005-01-17 12:24:43 0000</bug_when>
            <thetext>The sandbox error seemed to go away once I made a /root/.ssh directory.  That&apos;s the first cvs ebuild I&apos;ve run - could it be that cvs ebuilds need root to be set up for secure shell stuff?

cvs is actually relatively stable in the axiom development scheme of things - real bleeding edge development is done using the GNU arch system, and when things hit a reasonable point they are uploaded to savannah via cvs.  I have built an arch version that has HyperText, but IIRC there were some odd issues about non-standard install locations or some such.  As I understand it the next &quot;stable&quot; tarball release should hopefully include graphics and HyperText, so I figured that would be a better &quot;launch point&quot; for Axiom on gentoo.  (Which is why I started in on the BRL-CAD ebuild as opposed to fixing this one ;-)

So for naming of axiom ebuilds in portage, would you rather work on a date system (e.g. 3.0-20050212) than 3.x.y (or whatever winds up being used?)  I suppose it really doesn&apos;t matter much - dates can be switched over to 3.x.y if they start assigning such numbers, provided the upgrade order doesn&apos;t get confused.

Just curious - can the cvs ebuild system work with tla (i.e. GNU arch) repositories?</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2005-01-17 14:15:48 0000</bug_when>
            <thetext>Hmm - cvs build failed with the following:

gcc -march=athlon-xp -O3 -pipe -Wall -DVOL=volatile -fsigned-char -pipe -O3 -fomit-frame-pointer  -I/var/tmp/portage/axiom-9999/work/axiom/lsp/gcl-2.6.5/o -I../h -I../gcl-tk @XINCLUDES@  -c  sockets.c
gcc: @XINCLUDES@: No such file or directory
make[4]: *** [sockets.o] Error 1
make[4]: Leaving directory `/var/tmp/portage/axiom-9999/work/axiom/lsp/gcl-2.6.5/o&apos;
make[3]: *** [unixport/saved_pre_gcl] Error 2
make[3]: Leaving directory `/var/tmp/portage/axiom-9999/work/axiom/lsp/gcl-2.6.5&apos;
/bin/sh: unixport/saved_gcl: No such file or directory
make[2]: *** [gcldir] Error 127
make[2]: Leaving directory `/var/tmp/portage/axiom-9999/work/axiom/lsp&apos;
make[1]: *** [lspdir] Error 2
make[1]: Leaving directory `/var/tmp/portage/axiom-9999/work/axiom&apos;
make: *** [all] Error 2

!!! ERROR: sci-mathematics/axiom-9999 failed.
!!! Function src_compile, Line 76, Exitcode 2
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-01-17 16:09:10 0000</bug_when>
            <thetext>&gt; That&apos;s the first cvs ebuild I&apos;ve run - could it be that cvs ebuilds need root to be set up for secure shell stuff?

Yes, Savannah uses CVS authentication; that explains it :-]

&gt; So for naming of axiom ebuilds in portage, would you rather work on a date system (e.g. 3.0-20050212) than 3.x.y (or whatever winds up being used?)

Dates better until they sort their system out, I think.

&gt; Just curious - can the cvs ebuild system work with tla (i.e. GNU arch) repositories?

Don&apos;t think so, I don&apos;t think we have an etla eclass yet ;-)

&gt; #BuildFailure

When it runs configure for gcl, what does it dump for TK_XINCLUDES? I get the following:

{ ... }
TK_XINCLUDES=-I/usr/X11R6/include
TK_INCLUDE=-I/usr/lib/../include
TCL_INCLUDE=-I/usr/lib/../include
{ ... }

... and ...

gcc -Wall -DVOL=volatile -fsigned-char -pipe -O3 -fomit-frame-pointer  -I/tmp/gcl-2.6.5/o -I../h -I../gcl-tk -I/usr/X11R6/include  -c  sockets.c

... is Tcl and Tk installed?</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>smustudent1@yahoo.com</who>
            <bug_when>2005-01-17 18:54:55 0000</bug_when>
            <thetext>I should have TCL/TK installed.  Complete TCL/TK section below.

What version of portage are you working with?  I just upgraded to the very latest this morning.  portage-2.0.51-r13

Do I need to re-emerge something else to update it, perhaps?

# numerous TCL/TK variables culled from the tkConfig.sh and tclConfig.sh
# if these are found.
TK_CONFIG_PREFIX=/usr/lib
TK_LIBRARY=/usr/lib/tk8.4
TCL_LIBRARY=/usr/lib/tcl8.4
TK_XINCLUDES=@XINCLUDES@
TK_INCLUDE=-I/usr/lib/../include
TCL_INCLUDE=-I/usr/lib/../include
TK_LIB_SPEC=@TK_LIB_SPEC@
TK_BUILD_LIB_SPEC=@TK_BUILD_LIB_SPEC@
TK_XLIBSW=@XLIBSW@
TK_XINCLUDES=@XINCLUDES@
TCL_LIB_SPEC=
TCL_DL_LIBS=
TCL_LIBS=-ldl -lm
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-01-22 14:01:46 0000</bug_when>
            <thetext>&gt; I should have TCL/TK installed.

Strange, it seems like there&apos;s something wrong with a pkgconfig script further up the ladder.

Using 8.4.6 TCL and TK here, they work fine if that&apos;s of any help.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>znmeb@cesmail.net</who>
            <bug_when>2005-04-10 11:00:23 0000</bug_when>
            <thetext>I just installed axiom on my 1.3 GHz Athlon T-bird from Portage. I forgot to time the build, but it appears to have been flawless and I am starting to test the application. If there&apos;s a built-in test suite, I&apos;m planning to run it. Meanwhile, thanks to the good folks at Gentoo for packaging this. I actually worked at IBM when this package&apos;s predecessor, Scratchpad, was a gleam in someone&apos;s eye. :)</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>znmeb@cesmail.net</who>
            <bug_when>2005-04-10 11:18:12 0000</bug_when>
            <thetext>Well, it *built* flawlessly but it refuses to execute:

bash-2.05b$ /opt/axiom/bin/axiom
The directory for Axiom, /var/tmp/portage/axiom-9999/work/axiom/mnt/linux, doesnot exist.
Goodbye.
bash-2.05b$

I took a look at the ebuild; you probably need to copy over &quot;.../work/axiom/mnt/linux&quot; into the &quot;/opt&quot; tree for this to work, and change the variable in the shell script. /opt/axiom/bin/axiom says,

#!/bin/sh
AXIOM=/var/tmp/portage/axiom-9999/work/axiom/mnt/linux
#!/bin/sh

That needs to change to whereever you put the &quot;/axiom/mnt&quot; tree. In the ebuild, you have

src_install() {
    src_setenv

    dodir /usr/bin
    einstall INSTALL=${D}/opt/axiom COMMAND=${D}/usr/bin/axiom || die &apos;Failed to install Axiom!&apos;
    sed -e &apos;1d;2i AXIOM=/opt/axiom&apos; -i ${D}/usr/bin/axiom || die &apos;Failed to patch axiom runscript!&apos;

    # Get rid of /mnt/linux
    cd ${D}/opt/axiom
    mv mnt/linux/* .
    rm -rf mnt

    sed -e &apos;s/AXIOMsys/sman/g&apos; ${D}/usr/bin/axiom &gt; ${D}/usr/bin/sman
    sed -e &apos;s:$AXIOM/bin/clef -e ::g&apos; ${D}/usr/bin/axiom &gt; ${D}/usr/bin/AXIOMsys
    chmod +x ${D}/usr/bin/sman
    chmod +x ${D}/usr/bin/AXIOMsys
}

It looks like that didn&apos;t happen -- the work directory is gone but it didn&apos;t get moved. It doesn&apos;t seem to be anywhere at all:

DreamGate root # slocate -u
DreamGate root # locate /mnt/linux
DreamGate root #     

This should be easy to fix, but I&apos;m not sure how it&apos;s broken. I think for now I&apos;ll comment out the &quot;rm&quot; in the ebuild and run the emerge again just to see what happens.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>znmeb@cesmail.net</who>
            <bug_when>2005-04-10 11:26:23 0000</bug_when>
            <thetext>A little more evidence: apparently the &quot;mv&quot; failed but other stuff worked.

bash-2.05b$ axiom
/bin/sh: line 1: /lib/session: No such file or directory
/bin/sh: line 1: exec: /lib/session: cannot execute: No such file or directory
/bin/sh: line 1: /bin/clef: No such file or directory
/bin/sh: line 1: exec: /bin/clef: cannot execute: No such file or directory
/bin/sh: line 1: /bin/hypertex: No such file or directory
/bin/sh: line 1: exec: /bin/hypertex: cannot execute: No such file or directory
/bin/sh: line 1: /lib/viewman: No such file or directory
/bin/sh: line 1: exec: /lib/viewman: cannot execute: No such file or directory
                        AXIOM Computer Algebra System
                       Version: Axiom 3.4 (April 2005)
               Timestamp: Saturday April 9, 2005 at 23:07:13
-----------------------------------------------------------------------------
   Issue )copyright to view copyright notices.
   Issue )summary for a summary of useful system commands.
   Issue )quit to leave AXIOM and return to shell.
-----------------------------------------------------------------------------


Error: Cannot open the file /var/tmp/portage/axiom-9999/work/axiom/mnt/linux/algebra/compress.daase.
Fast links are on: do (si::use-fast-links nil) for debugging
Error signalled by SYSTEM:TOP-LEVEL.
Broken at APPLY.  Type :H for Help.
BOOT&gt;&gt;bash-2.05b$

So ... I guess I&apos;ll wait till someone who knows the ebuild comes up with a fix. It looks like there&apos;s more missing than just &quot;mnt/linux&quot;.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>mark@tvk.rwth-aachen.de</who>
            <bug_when>2005-07-06 04:29:54 0000</bug_when>
            <thetext>Emerging axiom produces this error at the beginning: 
 
-------------- 
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) 
kpathsea: Running mktexfmt latex.fmt 
tcfmgr: config file `tcfmgr.map&apos; (usually in $TEXMFMAIN/texconfig) not found. 
fmtutil: config file `fmtutil.cnf&apos; not found. 
I can&apos;t find the format file `latex.fmt&apos;! 
This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) 
kpathsea: Running mktexfmt latex.fmt 
tcfmgr: config file `tcfmgr.map&apos; (usually in $TEXMFMAIN/texconfig) not found. 
fmtutil: config file `fmtutil.cnf&apos; not found. 
I can&apos;t find the format file `latex.fmt&apos;! 
cp: cannot stat stat &amp;#8222;Makefile.dvi&amp;#8220;: File not found 
make: *** [all] Error 1 
-------------- </thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>mark@tvk.rwth-aachen.de</who>
            <bug_when>2005-07-06 04:44:11 0000</bug_when>
            <thetext>to my error above: 
I commented these lines out: 
----------- 
export VARTEXFONTS=${WORKDIR}/../temp 
export TEXMF=&quot;{${VARTEXFONTS},!!/usr/share/texmf}&quot; 
----------- 
and now it compiles. </thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>mark@tvk.rwth-aachen.de</who>
            <bug_when>2005-07-06 09:41:13 0000</bug_when>
            <thetext>It compiled fine now, but I cannot start it: 
------------ 
The directory for 
Axiom, /var/tmp/portage/axiom-9999/image//opt/axiom/mnt/linux, does not exist. 
Goodbye. 
------------ 
 
How to solve this? Setting $AXIOM doesn&apos;t change anything, this path seems to 
be hardcoded. </thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>mark@tvk.rwth-aachen.de</who>
            <bug_when>2005-07-14 02:48:21 0000</bug_when>
            <thetext>Solved that problem. Edit/opt/axiom/bin/axiom and change the head of the file  
from  
-------------------------------- 
#!/bin/sh  
AXIOM=/var/tmp/portage/axiom-9999/image//opt/axiom/mnt/linux 
-------------------------------- 
 
to 
 
-------------------------------- 
#!/bin/sh  
AXIOM=/opt/axiom 
-------------------------------- 
 
Further, the header from /usr/bin/axiom is wrong: 
-------------------------------- 
AXIOM=/opt/axiom 
AXIOM=/var/tmp/portage/axiom-9999/image//opt/axiom/mnt/linux 
export AXIOM 
PATH=${AXIOM}/bin:${PATH} 
export PATH 
#!/bin/sh 
-------------------------------- 
 
Change it to 
-------------------------------- 
#!/bin/sh 
AXIOM=/opt/axiom 
export AXIOM 
PATH=${AXIOM}/bin:${PATH} 
export PATH 
-------------------------------- 
 
Now it works! </thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>znmeb@cesmail.net</who>
            <bug_when>2005-08-25 19:17:46 0000</bug_when>
            <thetext>(In reply to comment #16)
&gt; Well, it *built* flawlessly but it refuses to execute:
&gt; 
&gt; bash-2.05b$ /opt/axiom/bin/axiom
&gt; The directory for Axiom, /var/tmp/portage/axiom-9999/work/axiom/mnt/linux,
doesnot exist.
&gt; Goodbye.
&gt; bash-2.05b$

This is still here as of today (2005-08-25). I downloaded Axiom directly from
the Savannah CVS repository and it built and executed with no problems
whatsover, so I&apos;m pretty sure it&apos;s an ebuild issue.

Meanwhile, if you haven&apos;t visited the Axiom site recently, it&apos;s greatly
improved. It&apos;s sort of like a Wiki/Forum now and includes some more information.
Axiom now builds with GCL 2.6.6, I think.</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>mark@tvk.rwth-aachen.de</who>
            <bug_when>2005-11-21 04:35:59 0000</bug_when>
            <thetext>Could someone apply the fixes from comment #19 and maybe from #21 too, please? 
At least commenting out the two lines (-&gt; #19) is trivial and ensures that 
axiom is being built, while #21 has to be done afterwards (you could add an 
einfo-line to this bugzilla-page or you can print the needed changes directly, 
if you don&apos;t want to patch the ebuild for this) 
 
btw: axiom doesn&apos;t compile &quot;*HOURS*&quot;, it compiles only two hours with 
aggressive cflags on a Celeron M 1500, 512MB Ram. Openoffice compiles 
&quot;*HOURS*&quot;. Maybe this comment should be changed ;-) </thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-12-04 13:42:43 0000</bug_when>
            <thetext>*** Bug 111923 has been marked as a duplicate of this bug. ***</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>plasmaroo@gentoo.org</who>
            <bug_when>2005-12-04 13:44:03 0000</bug_when>
            <thetext>Fixes suggested here added to portage CVS for the axiom CVS ebuild as well as a
gcl fix I&apos;ve now sent upstream. Please reopen this bug if there are any
problems. Thanks!</thetext>
          </long_desc>
      
          <attachment
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            <attachid>46665</attachid>
            <date>2004-12-22 14:39 0000</date>
            <desc>Ebuild for the Axiom computer algebra system</desc>
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            <attachid>46666</attachid>
            <date>2004-12-22 14:40 0000</date>
            <desc>Patch for internal gcl build settings</desc>
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            <attachid>46667</attachid>
            <date>2004-12-22 15:08 0000</date>
            <desc>Opps - I guess that&apos;s 3.0 beta, not 1.0</desc>
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            <date>2004-12-22 15:08 0000</date>
            <desc>Path for gcl settings - 3.0, not 1.0</desc>
            <filename>axiom-3.0b-gentoo.diff</filename>
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