54041 2004-06-15 18:04 0000 sim4-20030921 (New package) 2004-06-22 17:10:55 0000 1 1 1 Unclassified Gentoo Linux Ebuilds 2004.0 All Linux RESOLVED FIXED http://globin.cse.psu.edu/html/docs/sim4.html P2 enhancement --- 1 ribosome@gentoo.org sci@gentoo.org ribosome@gentoo.org 2004-06-15 18:04:04 0000 sim4 is a program to align cDNA and genomic DNA. This version is more recent than the one provided with the EMBASSY programs in the EMBOSS package, and could benefit molecular biologists and other scientists working in the field of genomic research. (Suggested category : app-sci) Reproducible: Always Steps to Reproduce: 1. 2. 3. ribosome@gentoo.org 2004-06-15 18:04:29 0000 Created an attachment (id=33348) sim4-20030921.ebuild ribosome@gentoo.org 2004-06-15 18:04:58 0000 Created an attachment (id=33349) metadata.xml - Assigns to the sci herd - Provides long description ribosome@gentoo.org 2004-06-22 17:10:55 0000 Commited. 33348 2004-06-15 18:04 0000 sim4-20030921.ebuild sim4-20030921.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDA0IEdlbnRvbyBUZWNobm9sb2dpZXMsIEluYy4KIyBEaXN0cmli dXRlZCB1bmRlciB0aGUgdGVybXMgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNlIHYy CiMgJEhlYWRlcjogJAoKREVTQ1JJUFRJT049IkEgcHJvZ3JhbSB0byBhbGlnbiBjRE5BIGFuZCBn ZW5vbWljIEROQSIKSE9NRVBBR0U9Imh0dHA6Ly9nbG9iaW4uY3NlLnBzdS5lZHUvaHRtbC9kb2Nz L3NpbTQuaHRtbCIKU1JDX1VSST0iaHR0cDovL2dsb2Jpbi5jc2UucHN1LmVkdS9mdHAvZGlzdC9z aW00L3NpbTQudGFyLmd6IgpMSUNFTlNFPSJHUEwtMiIKClNMT1Q9IjAiCktFWVdPUkRTPSJ+eDg2 IgpJVVNFPSIiCgpTPSR7V09SS0RJUn0vJHtQTn0uMjAwMy0wOS0yMQoKc3JjX2NvbXBpbGUoKSB7 CgllbWFrZSB8fCBkaWUKfQoKc3JjX2luc3RhbGwoKSB7Cglkb2JpbiBzaW00Cglkb2RvYyBSRUFE TUUucHN1Ymxhc3QgUkVBRE1FLnNpbTQgVkVSU0lPTgp9Cg== 33349 2004-06-15 18:04 0000 metadata.xml metadata.xml text/plain PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiPz4KPCFET0NUWVBFIHBrZ21ldGFk YXRhIFNZU1RFTSAiaHR0cDovL3d3dy5nZW50b28ub3JnL2R0ZC9tZXRhZGF0YS5kdGQiPgo8cGtn bWV0YWRhdGE+Cgk8aGVyZD5zY2k8L2hlcmQ+Cgk8bG9uZ2Rlc2NyaXB0aW9uPgoJCXNpbTQgaXMg YSBzaW1pbGFyaXR5LWJhc2VkIHRvb2wgZm9yIGFsaWduaW5nIGFuIGV4cHJlc3NlZCBETkEgc2Vx dWVuY2UKCQkoRVNULCBjRE5BLCBtUk5BKSB3aXRoIGEgZ2Vub21pYyBzZXF1ZW5jZSBmb3IgdGhl IGdlbmUuIEl0IGFsc28gZGV0ZWN0cwoJCWVuZCBtYXRjaGVzIHdoZW4gdGhlIHR3byBpbnB1dCBz ZXF1ZW5jZXMgb3ZlcmxhcCBhdCBvbmUgZW5kIChpLmUuLCB0aGUKCQlzdGFydCBvZiBvbmUgc2Vx dWVuY2Ugb3ZlcmxhcHMgdGhlIGVuZCBvZiB0aGUgb3RoZXIpLnNpbTQgZW1wbG95cyBhCgkJYmxh c3QtYmFzZWQgdGVjaG5pcXVlIHRvIGZpcnN0IGRldGVybWluZSB0aGUgYmFzaWMgbWF0Y2hpbmcg YmxvY2tzCgkJcmVwcmVzZW50aW5nIHRoZSAiZXhvbiBjb3JlcyIuIEluIHRoaXMgZmlyc3Qgc3Rh Z2UsIGl0IGRldGVjdHMgYWxsCgkJcG9zc2libGUgZXhhY3QgbWF0Y2hlcyBvZiBXLW1lcnMgKGku ZS4sIEROQSB3b3JkcyBvZiBzaXplIFcpIGJldHdlZW4KCQl0aGUgdHdvIHNlcXVlbmNlcyBhbmQg ZXh0ZW5kcyB0aGVtIHRvIG1heGltYWwgc2NvcmluZyBnYXAtZnJlZQoJCXNlZ21lbnRzLiBJbiB0 aGUgc2Vjb25kIHN0YWdlLCB0aGUgZXhvbiBjb3JlcyBhcmUgZXh0ZW5kZWQgaW50byB0aGUKCQlh ZGphY2VudCBhcy15ZXQtdW5tYXRjaGVkIGZyYWdtZW50cyB1c2luZyBncmVlZHkgYWxpZ25tZW50 IGFsZ29yaXRobXMsCgkJYW5kIGhldXJpc3RpY3MgYXJlIHVzZWQgdG8gZmF2b3IgY29uZmlndXJh dGlvbnMgdGhhdCBjb25mb3JtIHRvIHRoZQoJCXNwbGljZS1zaXRlIHJlY29nbml0aW9uIHNpZ25h bHMgKEdULUFHLCBDVC1BQykuIElmIG5lY2Vzc2FyeSwgdGhlCgkJcHJvY2VzcyBpcyByZXBlYXRl ZCB3aXRoIGxlc3Mgc3RyaW5nZW50IHBhcmFtZXRlcnMgb24gdGhlIHVubWF0Y2hlZAoJCWZyYWdt ZW50cy4KCTwvbG9uZ2Rlc2NyaXB0aW9uPgo8L3BrZ21ldGFkYXRhPgo=