45938 2004-03-27 16:28 0000 New suggested package : app-sci/tree-puzzle 2004-05-27 22:47:40 0000 1 1 1 Unclassified Gentoo Linux Ebuilds 2004.0 x86 Linux RESOLVED FIXED http://www.tree-puzzle.de/ P2 enhancement --- 1 ribosome@gentoo.org sci@gentoo.org koen.deforche@uz.kuleuven.ac.be ribosome@gentoo.org 2004-03-27 16:28:44 0000 Here is an ebuild for tree-puzzle-5.1, a program for maximum likelihood analysis of nucleotides, amino acids, and two-state data. The project's home page is at : http://www.tree-puzzle.de/. Tree-puzzle is widely used in computational biochemistry. Its inclusion in Portage could benefit biologists and bioinformaticians using Gentoo Linux. Tree-puzzle is programmed in C, has no special build-time or run-time dependencies, and should (I think) compile on any platform for which a C compiler is available. I have seen tree-puzzle used on x86 systems and on a SGI supercomputer. However, the attached ebuild has only been tested on x86 computers. Reproducible: Always Steps to Reproduce: 1. 2. 3. ribosome@gentoo.org 2004-03-27 16:30:09 0000 Created an attachment (id=28179) Ebuild for tree-puzzle-5.1 ribosome@gentoo.org 2004-05-11 18:47:16 0000 Created an attachment (id=31231) tree-puzzle-5.1.ebuild - Revised ebuild, ready for commit Added comments; changed dodoc for doins for installing the pdf manual (so it does not get gziped); removed empty DEPEND declaration; checked syntax with repoman full. ribosome@gentoo.org 2004-05-11 18:55:36 0000 Created an attachment (id=31232) metadata.xml Assigns package to the sci herd, and provides detailed description. phosphan@gentoo.org 2004-05-17 04:54:39 0000 Looks good. phosphan@gentoo.org 2004-05-27 22:47:40 0000 *** Bug 51991 has been marked as a duplicate of this bug. *** 28179 2004-03-27 16:30 0000 Ebuild for tree-puzzle-5.1 tree-puzzle-5.1.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDA0IEdlbnRvbyBUZWNobm9sb2dpZXMsIEluYy4KIyBEaXN0cmli dXRlZCB1bmRlciB0aGUgdGVybXMgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNlIHYy CiMgJEhlYWRlcjogJAoKREVTQ1JJUFRJT049Ik1heGltdW0gbGlrZWxpaG9vZCBhbmFseXNpcyBm b3IgbnVjbGVvdGlkZSwgYW1pbm8gYWNpZCwgYW5kIHR3by1zdGF0ZSBkYXRhIgpIT01FUEFHRT0i aHR0cDovL3d3dy50cmVlLXB1enpsZS5kZS8iClNSQ19VUkk9Imh0dHA6Ly93d3cudHJlZS1wdXp6 bGUuZGUvJHtQfS50YXIuZ3oiCgpMSUNFTlNFPSJHUEwtMiIKU0xPVD0iMCIKS0VZV09SRFM9In54 ODYiCklVU0U9IiIKCkRFUEVORD0iIgoKc3JjX2NvbXBpbGUoKSB7CgllY29uZiB8fCBkaWUKCWVt YWtlIHx8IGRpZSAiZW1ha2UgZmFpbGVkIgp9CgpzcmNfaW5zdGFsbCgpIHsKCW1ha2UgREVTVERJ Uj0ke0R9IGluc3RhbGwgfHwgZGllCglkb2RvYyBBVVRIT1JTIENoYW5nZUxvZyBDT1BZSU5HIFJF QURNRQoJZG9odG1sIGRvYy97Ki5odG1sLCouZ2lmfQoJZG9jaW50byBwZGYKCWRvZG9jIGRvYy8q LnBkZgoJaW5zaW50byAvdXNyL3NoYXJlLyR7UE59Cglkb2lucyBkYXRhL3sqLjN0cmVlcywqLmEs Ki5iLCoucGh5LCoubn0gZG9jL3sqLnBuZywqLmVwc30KfQo= 31231 2004-05-11 18:47 0000 tree-puzzle-5.1.ebuild - 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