40100 2004-02-01 10:55 0000 dev-lang/R-1.8.1 needs a patch for new xfree 2004-03-22 03:22:00 0000 1 1 1 Unclassified Gentoo Linux Applications unspecified x86 Linux RESOLVED FIXED P2 enhancement --- 1 zak@gentoo.se sci@gentoo.org biehl@binf.ku.dk zak@gentoo.se 2004-02-01 10:55:47 0000 There is a new version og the R language. The attached files is all that is required in order to install + build Reproducible: Always Steps to Reproduce: 1. emerge dev-lang/R 2. 3. Actual Results: R is installed in the newest version Expected Results: R is installed in the newest version R is installed in the newest version zak@gentoo.se 2004-02-01 10:56:21 0000 Created an attachment (id=24762) Ebuild file Ebuild file zak@gentoo.se 2004-02-01 10:57:26 0000 Created an attachment (id=24763) Digest file zak@gentoo.se 2004-02-01 10:58:20 0000 (From update of attachment 24762) ># Copyright 1999-2003 Gentoo Technologies, Inc. ># Distributed under the terms of the GNU General Public License v2 ># $Header: /home/cvsroot/gentoo-x86/dev-lang/R/R-1.8.0.ebuild,v 1.1 2003/10/11:41:00 george Exp $ > >IUSE="atlas X tcltk gnome" > >S=${WORKDIR}/${P} > >DESCRIPTION="R is GNU S - A language and environment for statistical computing and graphics." > >SRC_URI="http://cran.r-project.org/src/base/${P}.tgz" > > #There are daily release patches, don't know how to utilize these > #"ftp://ftp.stat.math.ethz.ch/Software/${PN}/${PN}-release.diff.gz" > >HOMEPAGE="http://www.r-project.org/" > >DEPEND="virtual/glibc > >=dev-lang/perl-5.6.1-r3 > >=sys-libs/readline-4.1-r3 > >=sys-libs/zlib-1.1.3-r2 > >=media-libs/jpeg-6b-r2 > >=media-libs/libpng-1.2.1 > atlas? ( dev-libs/atlas ) > X? ( virtual/x11 ) > tcltk? ( dev-lang/tk ) > gnome? ( >=gnome-base/gnome-libs-1.4.1.4 )" >SLOT="0" >LICENSE="GPL-2 LGPL-2.1" >KEYWORDS="~x86 ~sparc ~ppc" > >src_compile() { > > local myconf="--enable-R-profiling --enable-R-shlib --with-readline" > > #Eventually, we will want to take into account that a user may have > #an alternate or additional blas libraries, > #i.e. USE variable blas and and virtual/blas > use atlas || myconf="${myconf} --without-blas" #default enabled > > use X || myconf="${myconf} --without-x" #default enabled > > if use tcltk; then > #configure needs to find the files tclConfig.sh and tkConfig.sh > myconf="${myconf} --with-tcltk --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh" > else > myconf="${myconf} --without-tcltk" > fi > > use gnome && myconf="${myconf} --with-gnome" #default disabled > > ./configure \ > --host=${CHOST} \ > --prefix=/usr \ > --infodir=/usr/share/info \ > --mandir=/usr/share/man \ > ${myconf} || die "./configure failed" > > make || die > >} > >src_install () { > > make \ > prefix=${D}/usr \ > mandir=${D}/usr/share/man \ > infodir=${D}/usr/share/info \ > install || die "Installation Failed" > > #fix the R wrapper script to have the correct R_HOME_DIR > #sed regexp borrowed from included debian rules > cp ${D}/usr/lib/R/bin/R ${S}/bin/R.orig > sed -e '/^R_HOME_DIR=.*/s::R_HOME_DIR=/usr/lib/R:' \ > ${S}/bin/R.orig > ${D}/usr/lib/R/bin/R > > #R installs two identical wrappers under /usr/bin and /usr/lib/R/bin/ > #the 2nd one is corrected by above sed, for the 1st > #I'll just symlink it into /usr/bin > cd ${D}/usr/bin/ > rm R > dosym ../lib/R/bin/R /usr/bin/R > cd ${S} > > dodoc AUTHORS BUGS COPYING* ChangeLog FAQ INSTALL *NEWS README \ > RESOURCES THANKS VERSION Y2K > > #Add rudimentary menu entry if gnome > if use gnome; then > insinto /usr/share/gnome/apps/Applications > doins ${FILESDIR}/R.desktop > insinto /usr/share/pixmaps > doins ${FILESDIR}/R-logo.png > fi > >} zak@gentoo.se 2004-02-01 11:00:50 0000 Created an attachment (id=24764) Corrected Ebuild file biehl@binf.ku.dk 2004-02-25 08:47:36 0000 Created an attachment (id=26332) my ebuild biehl@binf.ku.dk 2004-02-25 08:49:32 0000 Hi, I just corrected my renamed my ebuild file to 1.8.1 and apparently everything goes fine (I also updated the name in line 3 of the .ebuild) I would like to see this ebuild in portage STABLE!! R-1.8.x is the STABLE branc and 1.8.1 is REQUIRED for the important BioConductor package in R -Anders phosphan@gentoo.org 2004-02-25 08:51:22 0000 Uhm, sorry, but R 1.8.1 is in portage since tuesday last week. If you think your ebuild is better for some reason, please re-open the bug and add some comment what's different and why. Thanks and sorry for not closing this bug in time. It will be stable in portage if it has been testing for about a month without bug report. Please note that portage stable is not the same as upstream stable. biehl@binf.ku.dk 2004-02-25 10:00:22 0000 Ok, I really must sync some more...if your ebuild works, mine is no better. I still think that, as 1.8.0 has been in the tree for some time, and the changes to 1.8.1 are _trivial_ there should be less of a wait before it is moved into stable. Thanks Anders mmc@maruska.dyndns.org 2004-03-07 16:56:01 0000 i had to patch R-1.8.1/src/modules/X11/dataentry.c this way: - #define NeedFunctionPrototypes 0 + #define NeedFunctionPrototypes 1 I use xfree86 4.3.99.x dberkholz@gentoo.org 2004-03-21 23:04:25 0000 Patrick could you check out whether the change suggested breaks 4.3.0? It is needed on newer X. phosphan@gentoo.org 2004-03-22 03:21:22 0000 Works fine for me, putting into CVS. phosphan@gentoo.org 2004-03-22 03:22:00 0000 Oh, and closing, of course :-) 24762 2004-02-01 10:56 0000 Ebuild file R-1.8.1.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDAzIEdlbnRvbyBUZWNobm9sb2dpZXMsIEluYy4KIyBEaXN0cmli dXRlZCB1bmRlciB0aGUgdGVybXMgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNlIHYy CiMgJEhlYWRlcjogL2hvbWUvY3Zzcm9vdC9nZW50b28teDg2L2Rldi1sYW5nL1IvUi0xLjguMC5l YnVpbGQsdiAxLjEgMjAwMy8xMC8xMTo0MTowMCBnZW9yZ2UgRXhwICQKCklVU0U9ImF0bGFzIFgg dGNsdGsgZ25vbWUiCgpTPSR7V09SS0RJUn0vJHtQfQoKREVTQ1JJUFRJT049IlIgaXMgR05VIFMg LSBBIGxhbmd1YWdlIGFuZCBlbnZpcm9ubWVudCBmb3Igc3RhdGlzdGljYWwgY29tcHV0aW5nIGFu ZCBncmFwaGljcy4iCgpTUkNfVVJJPSJodHRwOi8vY3Jhbi5yLXByb2plY3Qub3JnL3NyYy9iYXNl LyR7UH0udGd6IgoKCSNUaGVyZSBhcmUgZGFpbHkgcmVsZWFzZSBwYXRjaGVzLCBkb24ndCBrbm93 IGhvdyB0byB1dGlsaXplIHRoZXNlCgkjImZ0cDovL2Z0cC5zdGF0Lm1hdGguZXRoei5jaC9Tb2Z0 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