180713 2007-06-03 11:13 0000 stabilize dev-python/numpy-1.0.3 2007-10-29 15:31:34 0000 1 1 1 Unclassified Gentoo Linux Applications unspecified x86 Linux RESOLVED FIXED STABLEREQ P2 normal --- 159002 1 kim@khh.dk sci@gentoo.org chrb@gentoo.org coldwind@gentoo.org python@gentoo.org tanderson@gentoo.org kim@khh.dk 2007-06-03 11:13:52 0000 numpy 0.9.8 (USE=-lapack) fails build with: building 'numpy.core._dotblas' extension compiling C sources i686-pc-linux-gnu-gcc options: '-pthread -fno-strict-aliasing -DNDEBUG -O2 -march=pentium-m -pipe -fPIC' creating build/temp.linux-i686-2.4/numpy/core/blasdot compile options: '-DNO_ATLAS_INFO=1 -Inumpy/core/blasdot -Inumpy/core/include -Ibuild/src.linux-i686-2.4/numpy/core -Inumpy/core/src -Inumpy/core/include -I/usr/include/python2.4 -c' i686-pc-linux-gnu-gcc: numpy/core/blasdot/_dotblas.c /usr/bin/gfortran -shared build/temp.linux-i686-2.4/numpy/core/blasdot/_dotblas.o -L/usr/lib -lblas -lgfortran -o build/lib.linux-i686-2.4/numpy/core/_dotblas.so /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/bin/ld: cannot find -lblas collect2: ld returned 1 exit status /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/bin/ld: cannot find -lblas collect2: ld returned 1 exit status error: Command "/usr/bin/gfortran -shared build/temp.linux-i686-2.4/numpy/core/blasdot/_dotblas.o -L/usr/lib -lblas -lgfortran -o build/lib.linux-i686-2.4/numpy/core/_dotblas.so" failed with exit status 1 !!! ERROR in dev-python/numpy-0.9.8: !!! In distutils_src_compile at line 1060 !!! compilation failed !!! Call stack: !!! * distutils_src_compile (/var/tmp/paludis/dev-python/numpy-0.9.8/temp/loadsaveenv:1060) !!! * src_compile (/var/tmp/paludis/dev-python/numpy-0.9.8/temp/loadsaveenv:3325) !!! * ebuild_f_compile (/usr/libexec/paludis/src_compile.bash:51) !!! * ebuild_main (/usr/libexec/paludis/ebuild.bash:363) !!! * main (/usr/libexec/paludis/ebuild.bash:381) die trap: exiting with error. Install error: * In program paludis -i =dev-python/numpy-0.9.8: * When performing install action from command line: * When executing install task: * When installing 'dev-python/numpy-0.9.8': * Install error: Install failed for 'dev-python/numpy-0.9.8::gentoo' Resume command: paludis --log-level qa --dl-deps-default discard --install '=dev-python/numpy-0.9.8::gentoo' --add-to-world-spec '( =dev-python/numpy-0.9.8 )' numpy 1.0.2 builds fine Reproducible: Always Steps to Reproduce: 1.install numpy 0.9.8 (stable) 2. 3. hifi-laptop hifi # paludis --info paludis 0.24.2 Built by root@hifi-laptop on 2007-05-29T11:58:48+0200 CXX: i686-pc-linux-gnu-g++ 4.1.2 (Gentoo 4.1.2) CXXFLAGS: -O2 -march=pentium-m -pipe LDFLAGS: DATADIR: /usr/share LIBDIR: /usr/lib LIBEXECDIR: /usr/libexec SYSCONFDIR: /etc stdlib: GNU libstdc++ 20070214 libebt: 1.3.0 libwrapiter: 1.0.0 sandbox: enabled Repository virtuals: Configuration information: format: virtuals Repository installed_virtuals: Configuration information: format: installed_virtuals Repository gentoo: Configuration information: buildroot: /var/tmp/paludis cache: /usr/portage/metadata/cache distdir: /usr/portage/distfiles eclassdirs: /usr/portage/eclass format: ebuild location: /usr/portage names_cache: /usr/portage/.cache/names newsdir: /usr/portage/metadata/news pkgdir: /usr/portage/packages profiles: /usr/portage/profiles/default-linux/x86/2006.0 securitydir: /usr/portage/metadata/glsa setsdir: /usr/portage/sets sync: rsync://rsync.gentoo.org/gentoo-portage sync_options: write_cache: /var/empty Package information: app-admin/eselect-compiler: (none) dev-java/java-config: 1.3.7, 2.0.32 dev-lang/python: 2.3.5-r2, 2.4.4-r4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: (none) dev-util/confcache: (none) sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.17-r2 Variable information: ACCEPT_KEYWORDS: AUTOCLEAN: CBUILD: i686-pc-linux-gnu CFLAGS: -O2 -march=pentium-m -pipe CHOST: i686-pc-linux-gnu CONFIG_PROTECT: CONFIG_PROTECT_MASK: CTARGET: CXXFLAGS: -O2 -march=pentium-m -pipe DISTDIR: /usr/portage/distfiles FEATURES: GENTOO_MIRRORS: INSTALL_MASK: LANG: LC_ALL: LDFLAGS: LINGUAS: MAKEOPTS: -j2 PKGDIR: PORTAGE_COMPRESS: PORTAGE_COMPRESS_FLAGS: PORTAGE_RSYNC_EXTRA_OPTS: PORTAGE_RSYNC_OPTS: PORTAGE_TMPDIR: /var/tmp/paludis PORTDIR: /usr/portage PORTDIR_OVERLAY: SYNC: USE: Repository installed: Configuration information: buildroot: /var/tmp/paludis format: vdb location: /var/db/pkg names_cache: /var/db/pkg/.cache/names provides_cache: /var/db/pkg/.cache/provides root: / world: /var/db/pkg/world Repository my_overlay: Configuration information: buildroot: /var/tmp/paludis cache: /var/empty distdir: /usr/portage/distfiles eclassdirs: /usr/portage/eclass format: ebuild location: /usr/local/portage names_cache: /usr/local/portage/.cache/names newsdir: /usr/local/portage/metadata/news pkgdir: /usr/local/portage/packages profiles: /usr/portage/profiles/default-linux/x86/2006.0 securitydir: /usr/local/portage/metadata/glsa setsdir: /usr/local/portage/sets sync: sync_options: write_cache: /var/empty Repository paludis-extras: Configuration information: buildroot: /var/tmp/paludis cache: /var/empty distdir: /usr/portage/distfiles eclassdirs: /usr/portage/eclass /usr/local/paludis-extras/eclass format: ebuild location: /usr/local/paludis-extras master_repository: gentoo names_cache: /usr/local/paludis-extras/.cache/names newsdir: /usr/local/paludis-extras/metadata/news pkgdir: /usr/portage/packages profiles: /usr/portage/profiles/default-linux/x86/2006.0 securitydir: /usr/local/paludis-extras/metadata/glsa setsdir: /usr/local/paludis-extras/sets sync: sync_options: write_cache: /var/empty kim@khh.dk 2007-06-03 11:14:48 0000 spelling mistake in summary tanderson@gentoo.org 2007-06-03 13:05:44 0000 Builds fine here on amd64 with paludis 0.24.2 and portage 2.1.2-r7. Yes, I tested the package with both package managers. kim@khh.dk 2007-06-03 13:52:26 0000 gentoofan: do you have some blas library installed? Blas-config gives me no profiles to choose from, and seems that "lblas" i missing ? tanderson@gentoo.org 2007-06-03 16:28:42 0000 No I have no blas libraries installed. I am actually a bit perplexed at which library it should even depend on. It is obvious it wants to link to blas but it compiles fine on my system. weird. bicatali@gentoo.org 2007-06-03 21:04:52 0000 Hi, If you really need numpy-0.9.8, install blas-atlas. The only reason <numpy-1 is still in the tree is to support pymmlib, but if you don't use this package, I strongly recommend using the numpy-1.0.3, which I will ask for stabling in a week or so, if no new bug is found. Sébastien PS: anyone in the sci is familiar with pymmlib? It seems that this package only works with the old numpy-0.9.8 API. May be an update will be good. chrb@gentoo.org 2007-06-27 20:20:28 0000 Compile fails for me too. 1.0.3 works. Please stabilise 1.0.3 as soon as possible to fix this bug. tanderson@gentoo.org 2007-06-28 16:03:03 0000 CCing arches..... Hope I did this right. tanderson@gentoo.org 2007-06-28 16:15:43 0000 ====amd64==== 1.Merges fine. 2. Passes all Tests. 3. No collisions. Portage 2.1.2.7 (default-linux/amd64/2007.0, gcc-4.1.2, glibc-2.5-r3, 2.6.20-gentoo-r7 x86_64) ================================================================= System uname: 2.6.20-gentoo-r7 x86_64 unknown Gentoo Base System release 1.12.9 Timestamp of tree: Tue, 26 Jun 2007 01:00:10 +0000 ccache version 2.4 [enabled] dev-lang/python: 2.4.4-r4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.4-r7 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.16.1-r3 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.23b virtual/os-headers: 2.6.17-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-march=athlon64 -O2 -pipe" DISTDIR="/distfiles" FEATURES="ccache collision-protect distlocks metadata-transfer multilib-strict sandbox sfperms strict test userpriv" GENTOO_MIRRORS="http://mirrors.acm.cs.rpi.edu/gentoo/ http://distfiles.gentoo.org/" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://192.168.1.206/gentoo-portage" USE="X acl aiglx aim amd64 berkdb bitmap-fonts branding cli cracklib crypt cups dri fortran gdbm gpm gtk iconv imap ipv6 isdnlog libg++ midi mmx mpeg3 mudflap ncurses nls nptl nptlonly nvidia opengl openmp pam pcre perl pppd python qt3 readline reflection session sockets spl sqlite3 sse sse2 ssl tcpd test truetype-fonts type1-fonts unicode vim xcomposite xine xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS="nvidia" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY fmccor@gentoo.org 2007-06-28 17:02:52 0000 Do you mean dev-python/numpy-1.0.3? Sparc has no keyword for -1.0.2, and so will not go stable, but -1.0.3 is marked ~sparc and it runs all its tests and installs correctly. (However, -1.0.3 has been ~sparc for only two weeks; if you want us stable, please wait a couple weeks and ask us again. Leaving sparc on CC for tracking. fauli@gentoo.org 2007-06-29 16:17:48 0000 Should we stable blas-atlas .11-r1? And the corresponding eselect module? jer@gentoo.org 2007-07-09 16:32:23 0000 dev-python/numpy-1.0.3 stable for HPPA. gustavoz@gentoo.org 2007-07-17 13:17:33 0000 sparc stable with eselect-blas, eselect-cblas and blas-atlas-3.7.11-r1/3.6.0-r2 (== current but eselect-friendly). corsair@gentoo.org 2007-07-17 13:46:23 0000 same for ppc64 armin76@gentoo.org 2007-07-17 14:52:40 0000 ia64 stable, can't do alpha until bug 159002 is fixed angelos@gentoo.org 2007-07-17 15:51:28 0000 amd64 stable nixnut@gentoo.org 2007-07-20 14:21:56 0000 Stable on ppc fauli@gentoo.org 2007-07-22 15:39:29 0000 x86 stable armin76@gentoo.org 2007-10-29 15:31:34 0000 alpha stable finally, closing.