169822 2007-03-07 20:34 0000 Installation of asn2asn in sci-biology/ncbi-tools 2007-03-09 03:58:25 0000 1 1 1 Unclassified Gentoo Linux Ebuilds 2006.0 All Linux RESOLVED FIXED http://www.penguin-soft.com/penguin/man/1/asn2asn.html P2 enhancement --- 1 josemariafg@gmail.com ribosome@gentoo.org sci-biology@gentoo.org josemariafg@gmail.com 2007-03-07 20:34:26 0000 As it happened in the past with asn2all, ncbi-tools has many optional programs which are not installed by default (look for 'asn2all' at ncbi/make/makenet.unx, inside the package source). asn2asn is one of such programs, which is useful to translate NCBI ASN.1 binary files into ASN.1 textual ones (and vice-versa), using less memory than other alternative programs (for instance, asn2all). Reproducible: Always josemariafg@gmail.com 2007-03-07 20:37:04 0000 Created an attachment (id=112466) Patch for sci-biology/ncbi-tools This patch allows setting up the additional programs to compile using EXTRA_VIB environment variable. josemariafg@gmail.com 2007-03-07 20:41:22 0000 Created an attachment (id=112467) Ebuild which uses the previous patch to compile and install asn2asn This ebuild is based on sci-biology/ncbi-tools-20061015. It uses the instrumentation provided by the submitted patch, so optional NCBI programs to compile and install can be set up using EXTRA_VIB variable. This ebuild sets up that variable to asn2all and asn2asn, and future ebuilds/needs can change it. je_fro@gentoo.org 2007-03-07 20:45:36 0000 Hiya Jose, Could you please attach a diff between your ebuild and the ncbi-tools-20061015.ebuild ? It would be so much nicer! Thanks, je_fro josemariafg@gmail.com 2007-03-07 21:01:24 0000 Created an attachment (id=112471) Patch for ncbi-tools-20061015.ebuild This patch must be applied on ncbi-tools-20061015.ebuild, so it becomes ncbi-tools-20061015-r1.ebuild. It adds to the ebuild the capability to compile and install optional NCBI programs, like asn2all or asn2asn. ribosome@gentoo.org 2007-03-09 03:58:25 0000 Hi José, Thanks for your work. I just added your patch to Portage. 112466 2007-03-07 20:37 0000 Patch for sci-biology/ncbi-tools ncbi-tools-extra_vib.patch text/plain LS0tIG5jYmktMjAwNjEwMTUvbWFrZS9tYWtlZGlzLmNzaAkyMDA2LTA5LTE0IDE3OjM3OjAzLjAw MDAwMDAwMCArMDIwMAorKysgbmNiaS9tYWtlL21ha2VkaXMuY3NoCTIwMDctMDMtMDcgMjE6MDA6 MzYuMDkwODM2NDYwICswMTAwCkBAIC00ODUsNiArNDg1LDM0IEBACiAKIHNldCBuZXRfc3RhdCA9 ICRzdGF0dXMKIAoraWYgKCAkbmV0X3N0YXQgPT0gMCApIHRoZW4KKwkjIENvbXBpbGUgYWRkaXRp b25hbCB0b29scywgdXN1YWxseSBoaWRkZW4KKwlpZiAoICEgJD9FWFRSQV9WSUIgKSB0aGVuCisJ CXNldCBFWFRSQV9WSUIgPSAoIGFzbjJhbGwgKQorCWVuZGlmCisJCisJaWYgKCIkP05DQklfTVRf T1RIRVJMSUJTIiA9PSAiMSIpIHRoZW4KKwkJc2V0IENNRD0nbWFrZSAkTUZMRyAtZiBtYWtlbmV0 LnVueCBcCisJCQlDRkxBR1MxPVwiJE5DQklfT1BURkxBRyAkTkNCSV9DRkxBR1MxICRPR0xfSU5D TFVERVwiIFwKKwkJCUxERkxBR1MxPVwiJE5DQklfTERGTEFHUzFcIiBTSEVMTD1cIiROQ0JJX01B S0VfU0hFTExcIiBcCisJCQlBUj1cIiROQ0JJX0FSXCIgQ0M9XCIkTkNCSV9DQ1wiIFJBTj1cIiRO Q0JJX1JBTkxJQlwiIE9USEVSTElCUz1cIiROQ0JJX09USEVSTElCU1wiIFwKKwkJCVRIUkVBRF9P Qko9JE5DQklfVEhSRUFEX09CSiBcCisJCQlUSFJFQURfT1RIRVJMSUJTPVwiJE5DQklfTVRfT1RI RVJMSUJTXCIgXAorCQkJTkVURU5UUkVaVkVSU0lPTj1cIiRORVRFTlRSRVpWRVJTSU9OXCIgJE5F VF9WSUIgJEVYVFJBX1ZJQicKKwllbHNlCisJCXNldCBDTUQ9J21ha2UgJE1GTEcgLWYgbWFrZW5l dC51bnggXAorCQkJQ0ZMQUdTMT1cIiROQ0JJX09QVEZMQUcgJE5DQklfQ0ZMQUdTMSAkT0dMX0lO Q0xVREVcIiBcCisJCQlMREZMQUdTMT1cIiROQ0JJX0xERkxBR1MxXCIgU0hFTEw9XCIkTkNCSV9N QUtFX1NIRUxMXCIgXAorCQkJQVI9XCIkTkNCSV9BUlwiIENDPVwiJE5DQklfQ0NcIiBSQU49XCIk TkNCSV9SQU5MSUJcIiBPVEhFUkxJQlM9XCIkTkNCSV9PVEhFUkxJQlNcIiBcCisJCQlORVRFTlRS RVpWRVJTSU9OPVwiJE5FVEVOVFJFWlZFUlNJT05cIiAkTkVUX1ZJQiAkRVhUUkFfVklCJworCWVu ZGlmCisJZXZhbCBlY2hvICRDTUQKKwlldmFsIGVjaG8gJENNRCB8IHNoCisJCisJc2V0IG5ldF9z dGF0ID0gJHN0YXR1cworCQorZW5kaWYKKwogaWYgKCRtYWtlX3N0YXQgIT0gMCB8fCAkZGVtb19z dGF0ICE9IDAgfHwgJHRocmVhZGVkX2RlbW9fc3RhdCAhPSAwIHx8ICRuZXRfc3RhdCAhPSAwKSB0 aGVuCiAgICBlY2hvIEZBSUxVUkUgcHJpbWFyeSBtYWtlIHN0YXR1cyA9ICRtYWtlX3N0YXQsIGRl bW8gPSAkZGVtb19zdGF0LCB0aHJlYWRlZF9kZW1vID0gJHRocmVhZGVkX2RlbW9fc3RhdCwgbmV0 ID0gJG5ldF9zdGF0CiAJY2F0IDw8RU9GCg== 112467 2007-03-07 20:41 0000 Ebuild which uses the previous patch to compile and install asn2asn ncbi-tools-20061015-r1.ebuild text/plain IyBDb3B5cmlnaHQgMTk5OS0yMDA2IEdlbnRvbyBGb3VuZGF0aW9uCiMgRGlzdHJpYnV0ZWQgdW5k ZXIgdGhlIHRlcm1zIG9mIHRoZSBHTlUgR2VuZXJhbCBQdWJsaWMgTGljZW5zZSB2MgojICRIZWFk ZXI6IC92YXIvY3Zzcm9vdC9nZW50b28teDg2L3NjaS1iaW9sb2d5L25jYmktdG9vbHMvbmNiaS10 b29scy0yMDA2MTAxNS5lYnVpbGQsdiAxLjEgMjAwNi8xMS8wMyAwMjowNDo1NiByaWJvc29tZSBF eHAgJAoKaW5oZXJpdCBmbGFnLW8tbWF0aWMgdG9vbGNoYWluLWZ1bmNzIGV1dGlscyBhdXRvdG9v bHMKCkRFU0NSSVBUSU9OPSJEZXZlbG9wbWVudCB0b29sa2l0IGFuZCBhcHBsaWNhdGlvbnMgZm9y IGNvbXB1dGF0aW9uYWwgYmlvbG9neSIKTElDRU5TRT0icHVibGljLWRvbWFpbiIKSE9NRVBBR0U9 Imh0dHA6Ly93d3cubmNiaS5ubG0ubmloLmdvdi8iClNSQ19VUkk9Im1pcnJvcjovL2dlbnRvby8k e1B9LnRhci5negoJZG9jPyAoIG1pcnJvcjovL2dlbnRvby8ke1BOfS1zZGstZG9jLnRhci5iejIg KQoJbXBpPyAoIG1pcnJvcjovL2dlbnRvby9tcGlibGFzdC0yMDA2MDYyNS50YXIuZ3ogKSIKClNM T1Q9IjAiCktFWVdPUkRTPSJ+YWxwaGEgfmFtZDY0IH5wcGMgfnBwYzY0IH5zcGFyYyB+eDg2IgpJ VVNFPSJkb2MgbXBpIFgiCgpERVBFTkQ9ImFwcC1zaGVsbHMvdGNzaAoJZGV2LWxhbmcvcGVybAoJ bWVkaWEtbGlicy9saWJwbmcKCXN5cy1kZXZlbC9wbWFrZQoJbXBpPyAoIHZpcnR1YWwvbXBpICkK CVg/ICggdmlydHVhbC9tb3RpZiApIgoKUz0iJHtXT1JLRElSfS9uY2JpIgoKRVhUUkFfVklCPSJh c24yYWxsIGFzbjJhc24iCmV4cG9ydCBFWFRSQV9WSUIKCnBrZ19zZXR1cCgpIHsKCWVjaG8KCWV3 YXJuICdQbGVhc2Ugbm90ZSB0aGF0IHRoZSBOQ0JJIHRvb2xraXQgKGFuZCBlc3BlY2lhbGx5IHRo ZSBYJwoJZXdhcm4gJ2FwcGxpY2F0aW9ucykgYXJlIGtub3duIHRvIGhhdmUgY29tcGlsYXRpb24g YW5kIHJ1bi10aW1lJwoJZXdhcm4gJ3Byb2JsZW1zIHdoZW4gY29tcGlsZWQgd2l0aCBhZ3Jlc3Np dmUgY29tcGlsYXRpb24gZmxhZ3MuIFRoZScKCWV3YXJuICciLU8zIiBmbGFnIGlzIGZpbHRlcmVk IGJ5IHRoZSBlYnVpbGQgb24gdGhlIHg4NiBhcmNoaXRlY3R1cmUgaWYnCglld2FybiAnWCBzdXBw b3J0IGlzIGVuYWJsZWQuJwoJZWNobwp9CgpzcmNfdW5wYWNrKCkgewoJdW5wYWNrICR7QX0KCWNk ICIke1N9IgoKCWVwYXRjaCAiJHtGSUxFU0RJUn0iLyR7UE59LWV4dHJhX3ZpYi5wYXRjaAoKCWlm IHVzZSBwcGM2NDsgdGhlbgoJCWVwYXRjaCAiJHtGSUxFU0RJUn0iLyR7UE59LWxvcC5wYXRjaAoJ ZmkKCglpZiB1c2UgbXBpOyB0aGVuCgkJY2QgIiR7V09SS0RJUn0iCgkJZXBhdGNoICIke1dPUktE SVJ9Ii9tcGlibGFzdC9uY2JpX0RlYzIwMDVfZXZhbHVlLnBhdGNoCglmaQoKCWlmICEgdXNlIFg7 IHRoZW4KCQljZCAiJHtTfSIvbWFrZQoJCXNlZCAtZSAiczpcI3NldCBIQVZFX09HTD0wOnNldCBI QVZFX09HTD0wOiIgXAoJCQktZSAiczpcI3NldCBIQVZFX01PVElGPTA6c2V0IEhBVkVfTU9USUY9 MDoiIFwKCQkJLWkgbWFrZWRpcy5jc2ggfHwgZGllCgllbHNlCgkJaWYgdXNlIHg4NjsgdGhlbgoJ CQkjIFggYXBwbGljYXRpb25zIHNlZ2ZhdWx0IG9uIHN0YXJ0dXAgb24geDg2IHdpdGggLU8zLgoJ CQlyZXBsYWNlLWZsYWdzICctTzMnICctTzInCgkJZmkKCWZpCgoJIyBBcHBseSB1c2VyIEMgZmxh Z3MuLi4KCWNkICIke1N9Ii9wbGF0Zm9ybQoJIyAuLi4gb24geDg2Li4uCglzZWQgLWUgInMvTkNC SV9DRkxBR1MxID0gLWMvTkNCSV9DRkxBR1MxID0gLWMgJHtDRkxBR1N9LyIgXAoJCS1lICJzL05D QklfTERGTEFHUzEgPSAtTzMgLW1jcHU9cGVudGl1bTQvTkNCSV9MREZMQUdTMSA9ICR7Q0ZMQUdT fS8iIFwKCQktZSAicy9OQ0JJX09QVEZMQUcgPSAtTzMgLW1jcHU9cGVudGl1bTQvTkNCSV9PUFRG TEFHID0gJHtDRkxBR1N9LyIgXAoJCS1pIGxpbnV4LXg4Ni5uY2JpLm1rIHx8IGRpZQoJIyAuLi4g b24gYWxwaGEuLi4KCXNlZCAtZSAicy9OQ0JJX0NGTEFHUzEgPSAtYy9OQ0JJX0NGTEFHUzEgPSAt YyAke0NGTEFHU30vIiBcCgkJLWUgInMvTkNCSV9MREZMQUdTMSA9IC1PMyAtbWllZWUvTkNCSV9M REZMQUdTMSA9IC1taWVlZSAke0NGTEFHU30vIiBcCgkJLWUgInMvTkNCSV9PUFRGTEFHID0gLU8z IC1taWVlZS9OQ0JJX09QVEZMQUcgPSAtbWllZWUgJHtDRkxBR1N9LyIgXAoJCS1pIGxpbnV4LWFs cGhhLm5jYmkubWsgfHwgZGllCgkjIC4uLiBvbiBocHBhLi4uCglzZWQgLWUgInMvTkNCSV9DRkxB R1MxID0gLWMvTkNCSV9DRkxBR1MxID0gLWMgJHtDRkxBR1N9LyIgXAoJCS1lICJzL05DQklfTERG TEFHUzEgPSAtTzIvTkNCSV9MREZMQUdTMSA9ICR7Q0ZMQUdTfS8iIFwKCQktZSAicy9OQ0JJX09Q VEZMQUcgPSAtTzIvTkNCSV9PUFRGTEFHID0gJHtDRkxBR1N9LyIgXAoJCS1pIGhwcGFsaW51eC5u Y2JpLm1rIHx8IGRpZQoJIyAuLi4gb24gcHBjLi4uCglzZWQgLWUgInMvTkNCSV9DRkxBR1MxID0g LWMvTkNCSV9DRkxBR1MxID0gLWMgJHtDRkxBR1N9LyIgXAoJCS1lICJzL05DQklfTERGTEFHUzEg PSAtTzIvTkNCSV9MREZMQUdTMSA9ICR7Q0ZMQUdTfS8iIFwKCQktZSAicy9OQ0JJX09QVEZMQUcg PSAtTzIvTkNCSV9PUFRGTEFHID0gJHtDRkxBR1N9LyIgXAoJCS1pIHBwY2xpbnV4Lm5jYmkubWsg fHwgZGllCgkjIC4uLiBvbiBnZW5lcmljIExpbnV4LgoJc2VkIC1lICJzL05DQklfQ0ZMQUdTMSA9 IC1jL05DQklfQ0ZMQUdTMSA9IC1jICR7Q0ZMQUdTfS8iIFwKCQktZSAicy9OQ0JJX0xERkxBR1Mx ID0gLU8zL05DQklfTERGTEFHUzEgPSAke0NGTEFHU30vIiBcCgkJLWUgInMvTkNCSV9PUFRGTEFH ID0gLU8zL05DQklfT1BURkxBRyA9ICR7Q0ZMQUdTfS8iIFwKCQktaSBsaW51eC5uY2JpLm1rIHx8 IGRpZQoKCSMgUHV0IGluIG91ciBNQUtFT1BUUyAoZG9lc24ndCB3b3JrKS4KCSMgc2VkIC1lICJz Om1ha2UgXCRNRkxHOm1ha2UgJHtNQUtFT1BUU306IiAtaSBuY2JpL21ha2UvbWFrZWRpcy5jc2gK CgkjIFNldCBDIGNvbXBpbGVyLi4uCgkjIC4uLiBvbiB4ODYuLi4KCXNlZCAtaSAtZSAicy9OQ0JJ X0NDID0gZ2NjL05DQklfQ0MgPSAkKHRjLWdldENDKS8iIGxpbnV4LXg4Ni5uY2JpLm1rIHx8IGRp ZQoJIyAuLi4gb24gYWxwaGEuLi4KCXNlZCAtaSAtZSAicy9OQ0JJX0NDID0gZ2NjL05DQklfQ0Mg PSAkKHRjLWdldENDKS8iIGxpbnV4LWFscGhhLm5jYmkubWsgfHwgZGllCgkjIC4uLiBvbiBocHBh Li4uCglzZWQgLWkgLWUgInMvTkNCSV9DQyA9IGdjYy9OQ0JJX0NDID0gJCh0Yy1nZXRDQykvIiBo cHBhbGludXgubmNiaS5tayB8fCBkaWUKCSMgLi4uIG9uIHBwYy4uLgoJc2VkIC1pIC1lICJzL05D QklfQ0MgPSBnY2MvTkNCSV9DQyA9ICQodGMtZ2V0Q0MpLyIgcHBjbGludXgubmNiaS5tayB8fCBk aWUKCSMgLi4uIG9uIGdlbmVyaWMgTGludXguCglzZWQgLWkgLWUgInMvTkNCSV9DQyA9IGdjYy9O Q0JJX0NDID0gJCh0Yy1nZXRDQykvIiBsaW51eC5uY2JpLm1rIHx8IGRpZQoKCSMgR05VIG1ha2Ug My44MSBpcyBjb25mdXNlZCBieSB0aG9zZSBuaWdodG1hcmlzaCBNYWtlZmlsZXMsIHNvIHdlIHVz ZSBwbWFrZQoJIyBpbnN0ZWFkLiBUaGUgcmlnaHQgc29sdXRpb24gd291bGQgYmUgdG8gZml4IHRo ZSBNYWtlZmlsZXMuIChCZSBteSBndWVzdC4pCgljZCAiJHtTfSIvbWFrZQoJc2VkIC1pIC1lICJz JUNNRD0nbWFrZSVDTUQ9Jy91c3IvYmluL3BtYWtlJSIgbWFrZWRpcy5jc2ggfHwgZGllIFwKCQkJ IkZhaWxlZCB0byByZXBsYWNlIG1ha2UgYnkgcG1ha2UuIgp9CgpzcmNfY29tcGlsZSgpIHsKCWNk ICIke1dPUktESVJ9IgoJbmNiaS9tYWtlL21ha2VkaXMuY3NoIHx8IGRpZQoJbWtkaXIgIiR7U30i L2NnaQoJbWtkaXIgIiR7U30iL3JlYWwKCW12ICIke1N9Ii9iaW4vKi5jZ2kgIiR7U30iL2NnaSB8 fCBkaWUKCW12ICIke1N9Ii9iaW4vKi5SRUFMICIke1N9Ii9yZWFsIHx8IGRpZQoKCWlmIHVzZSBt cGk7IHRoZW4KCQljZCAiJHtXT1JLRElSfSIvbXBpYmxhc3QKCQlBTV9PUFQ9Ii1hIgoJCWVhdXRv cmVjb25mCgkJZWNvbmYgLS13aXRoLW5jYmk9IiR7V09SS0RJUn0iL25jYmkgLS13aXRoLW1waT0v dXNyIHx8IGRpZQoJCWVtYWtlIHx8IGRpZQoJZmkKfQoKc3JjX2luc3RhbGwoKSB7Cglkb2JpbiAi JHtTfSIvYmluLyogfHwgZGllICJGYWlsZWQgdG8gaW5zdGFsbCBiaW5hcmllcy4iCglmb3IgcHJv Z3JhbSBpbiAkRVhUUkFfVklCIDsgZG8KCQlkb2JpbiAiJHtTfSIvYnVpbGQvJHByb2dyYW0gfHwg ZGllICJGYWlsZWQgdG8gaW5zdGFsbCBiaW5hcmllcy4iCglkb25lCglkb2xpYiAiJHtTfSIvbGli LyogfHwgZGllICJGYWlsZWQgdG8gaW5zdGFsbCBsaWJyYXJpZXMuIgoJbWtkaXIgLXAgIiR7RH0i L3Vzci9pbmNsdWRlL25jYmkKCWNwIC1STCAiJHtTfSIvaW5jbHVkZS8qICIke0R9Ii91c3IvaW5j bHVkZS9uY2JpIHx8IFwKCQlkaWUgIkZhaWxlZCB0byBpbnN0YWxsIGhlYWRlcnMuIgoKCWlmIHVz ZSBtcGk7IHRoZW4KCQljZCAiJHtXT1JLRElSfSIvbXBpYmxhc3QKCQltYWtlIGluc3RhbGwgREVT VERJUj0iJHtEfSIgfHwgZGllICJGYWlsZWQgdG8gaW5zdGFsbCBNUEkgYmxhc3QuIgoJZmkKCgkj IFRPRE86IFdlYiBhcHBzCgkjaW5zaW50byAvdXNyL3NoYXJlL25jYmkvbGliL2NnaQoJI2RvaW5z ICR7U30vY2dpLyoKCSNpbnNpbnRvIC91c3Ivc2hhcmUvbmNiaS9saWIvcmVhbAoJI2RvaW5zICR7 U30vcmVhbC8qCgkjIFRPRE86IEFkZCBzdXBwb3J0IGZvciB3d3dibGFzdC4KCgkjIEJhc2ljIGRv Y3VtZW50YXRpb24KCWRvZG9jICIke1N9Ii97UkVBRE1FLFZFUlNJT04sZG9jL3sqLnR4dCxSRUFE TUUuYXNuMnhtbH19IHx8IFwKCQlkaWUgIkZhaWxlZCB0byBpbnN0YWxsIGJhc2ljIGRvY3VtZW50 YXRpb24uIgoJbmV3ZG9jICIke1N9Ii9kb2MvZmEyaHRncy9SRUFETUUgUkVBRE1FLmZhMmh0Z3Mg fHwgXAoJCWRpZSAiRmFpbGVkIHJlbmFtaW5nIGZhMmh0Z3MgZG9jdW1lbnRhdGlvbi4iCgluZXdk b2MgIiR7U30iL2NvbmZpZy9SRUFETUUgUkVBRE1FLmNvbmZpZyB8fCBcCgkJZGllICJGYWlsZWQg cmVuYW1pbmcgY29uZmlnIGRvY3VtZW50YXRpb24uIgoJbmV3ZG9jICIke1N9Ii9uZXR3b3JrL2Vu Y3J5cHQvUkVBRE1FIFJFQURNRS5lbmNyeXB0IHx8IFwKCQlkaWUgIkZhaWxlZCByZW5hbWluZyBl bmNyeXB0IGRvY3VtZW50YXRpb24uIgoJbmV3ZG9jICIke1N9Ii9uZXR3b3JrL25zY2xpbGliL3Jl YWRtZSBSRUFETUUubnNjbGlsaWIgfHwgXAoJZGllICJGYWlsZWQgcmVuYW1pbmcgbnNjbGlsaWIg ZG9jdW1lbnRhdGlvbi4iCgluZXdkb2MgIiR7U30iL3NlcXVpbi9SRUFETUUgUkVBRE1FLnNlcXVp biB8fCBcCgkJZGllICJGYWlsZWQgcmVuYW1pbmcgc2VxdWluIGRvY3VtZW50YXRpb24uIgoJZG9t YW4gIiR7U30iL2RvYy9tYW4vKiB8fCBcCgkJZGllICJGYWlsZWQgdG8gaW5zdGFsbCBtYW4gcGFn ZXMuIgoKCSMgSHlwZXJ0ZXh0IHVzZXIgZG9jdW1lbnRhdGlvbgoJZG9odG1sICIke1N9Ii97UkVB RE1FLmh0bSxkb2MveyouaHRtbCwqLmdpZn19IHx8IFwKCQlkaWUgIkZhaWxlZCB0byBpbnN0YWxs IEhUTUwgZG9jdW1lbnRhdGlvbi4iCglpbnNpbnRvIC91c3Ivc2hhcmUvZG9jLyR7UEZ9L2h0bWwv Ymxhc3QKCWRvaW5zICIke1N9Ii9kb2MvYmxhc3QvKiB8fCBkaWUgIkZhaWxlZCB0byBpbnN0YWxs IGJsYXN0IEhUTUwgZG9jdW1lbnRhdGlvbi4iCgoJIyBEZXZlbG9wZXIgZG9jdW1lbnRhdGlvbgoJ aWYgdXNlIGRvYzsgdGhlbgoJCSMgSHlwZXJ0ZXh0IFNESyBkb2N1bWVudGF0aW9uCgkJaW5zaW50 byAvdXNyL3NoYXJlL2RvYy8ke1BGfS9odG1sL3NkawoJCWRvaW5zICIke1dPUktESVJ9Ii8ke1BO fS1zZGstZG9jLyogfHwgZGllCgoJCSMgRGVtbyBwcm9ncmFtcwoJCW1rZGlyICIke0R9Ii91c3Iv c2hhcmUvbmNiaQoJCW12ICIke1N9Ii9kZW1vICIke0R9Ii91c3Ivc2hhcmUvbmNiaS9kZW1vIHx8 IGRpZQoJZmkKCgkjIFNoYXJlZCBkYXRhIChzaW1pbGFyaXR5IG1hdHJpY2VzIGFuZCBzdWNoKSBh bmQgZGF0YWJhc2UgZGlyZWN0b3J5LgoJaW5zaW50byAvdXNyL3NoYXJlL25jYmkvZGF0YQoJZG9p bnMgIiR7U30iL2RhdGEvKiB8fCBkaWUgIkZhaWxlZCB0byBpbnN0YWxsIHNoYXJlZCBkYXRhLiIK CWRvZGlyIC91c3Ivc2hhcmUvbmNiaS9mb3JtYXRkYiB8fCBkaWUKCgkjIERlZmF1bHQgY29uZmln IGZpbGUgdG8gc2V0IHRoZSBwYXRoIGZvciBzaGFyZWQgZGF0YS4KCWluc2ludG8gL2V0Yy9uY2Jp CgluZXdpbnMgIiR7RklMRVNESVJ9Ii9uY2JpcmMgLm5jYmlyYyB8fCBkaWUgIkZhaWxlZCB0byBp bnN0YWxsIGNvbmZpZyBmaWxlLiIKCgkjIEVudiBmaWxlIHRvIHNldCB0aGUgbG9jYXRpb24gb2Yg dGhlIGNvbmZpZyBmaWxlIGFuZCBCTEFTVCBkYXRhYmFzZXMuCgluZXdlbnZkICIke0ZJTEVTRElS fSIvMjFuY2JpLXIxIDIxbmNiaSB8fCBkaWUgIkZhaWxlZCB0byBpbnN0YWxsIGVudiBmaWxlLiIK fQo= 112471 2007-03-07 21:01 0000 Patch for ncbi-tools-20061015.ebuild ncbi-tools-20061015-r1.ebuild.patch text/plain LS0tIC91c3IvcG9ydGFnZS9zY2ktYmlvbG9neS9uY2JpLXRvb2xzL25jYmktdG9vbHMtMjAwNjEw MTUuZWJ1aWxkCTIwMDYtMTEtMDMgMDM6MDQ6NTYuMDAwMDAwMDAwICswMTAwCisrKyAvdXNyL2xv Y2FsL3BvcnRvdmVybGF5L3NjaS1iaW9sb2d5L25jYmktdG9vbHMvbmNiaS10b29scy0yMDA2MTAx NS1yMS5lYnVpbGQJMjAwNy0wMy0wNyAyMDo1NjozMi41MTcxNjIyMDcgKzAxMDAKQEAgLTI0LDYg KzI0LDkgQEAKIAogUz0iJHtXT1JLRElSfS9uY2JpIgogCitFWFRSQV9WSUI9ImFzbjJhbGwgYXNu MmFzbiIKK2V4cG9ydCBFWFRSQV9WSUIKKwogcGtnX3NldHVwKCkgewogCWVjaG8KIAlld2FybiAn UGxlYXNlIG5vdGUgdGhhdCB0aGUgTkNCSSB0b29sa2l0IChhbmQgZXNwZWNpYWxseSB0aGUgWCcK QEAgLTM4LDcgKzQxLDcgQEAKIAl1bnBhY2sgJHtBfQogCWNkICIke1N9IgogCi0JZXBhdGNoICIk e0ZJTEVTRElSfSIvJHtQTn0tYXNuMmFsbC5wYXRjaAorCWVwYXRjaCAiJHtGSUxFU0RJUn0iLyR7 UE59LWV4dHJhX3ZpYi5wYXRjaAogCiAJaWYgdXNlIHBwYzY0OyB0aGVuCiAJCWVwYXRjaCAiJHtG SUxFU0RJUn0iLyR7UE59LWxvcC5wYXRjaApAQCAtMTMwLDcgKzEzMyw5IEBACiAKIHNyY19pbnN0 YWxsKCkgewogCWRvYmluICIke1N9Ii9iaW4vKiB8fCBkaWUgIkZhaWxlZCB0byBpbnN0YWxsIGJp bmFyaWVzLiIKLQlkb2JpbiAiJHtTfSIvYnVpbGQvYXNuMmFsbCB8fCBkaWUgIkZhaWxlZCB0byBp bnN0YWxsIGJpbmFyaWVzLiIKKwlmb3IgcHJvZ3JhbSBpbiAkRVhUUkFfVklCIDsgZG8KKwkJZG9i aW4gIiR7U30iL2J1aWxkLyRwcm9ncmFtIHx8IGRpZSAiRmFpbGVkIHRvIGluc3RhbGwgYmluYXJp ZXMuIgorCWRvbmUKIAlkb2xpYiAiJHtTfSIvbGliLyogfHwgZGllICJGYWlsZWQgdG8gaW5zdGFs bCBsaWJyYXJpZXMuIgogCW1rZGlyIC1wICIke0R9Ii91c3IvaW5jbHVkZS9uY2JpCiAJY3AgLVJM ICIke1N9Ii9pbmNsdWRlLyogIiR7RH0iL3Vzci9pbmNsdWRlL25jYmkgfHwgXAo=