<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
<!DOCTYPE bugzilla SYSTEM "http://bugs.gentoo.org/bugzilla.dtd">

<bugzilla version="2.22.7"
          urlbase="http://bugs.gentoo.org/"
          maintainer="bugzilla@gentoo.org"
>

    <bug>
          <bug_id>163574</bug_id>
          
          <creation_ts>2007-01-24 11:25 0000</creation_ts>
          <short_desc>sci-chemistry/shelx-20060317 cannot compile due to an automake error</short_desc>
          <delta_ts>2007-06-23 09:53:24 0000</delta_ts>
          <reporter_accessible>1</reporter_accessible>
          <cclist_accessible>1</cclist_accessible>
          <classification_id>1</classification_id>
          <classification>Unclassified</classification>
          <product>Gentoo Linux</product>
          <component>Ebuilds</component>
          <version>unspecified</version>
          <rep_platform>All</rep_platform>
          <op_sys>Linux</op_sys>
          <bug_status>RESOLVED</bug_status>
          <resolution>FIXED</resolution>
          
          
          <keywords>Inclusion</keywords>
          <priority>P2</priority>
          <bug_severity>normal</bug_severity>
          <target_milestone>---</target_milestone>
          
          
          
          <everconfirmed>1</everconfirmed>
          <reporter>daweonline@gmail.com</reporter>
          <assigned_to>sci-chemistry@gentoo.org</assigned_to>
          

      

      
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-01-24 11:25:24 0000</bug_when>
            <thetext>While trying to emerge shelx I have an automake error at the beginning of installation process. I attach the emerge log, the automake out and a suggested patch

Reproducible: Always

Steps to Reproduce:
1. emerge shelx</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-01-24 11:30:05 0000</bug_when>
            <thetext>Created an attachment (id=108006)
shelx emerge log

</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-01-24 11:30:31 0000</bug_when>
            <thetext>Created an attachment (id=108008)
automake out

</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-01-24 11:31:01 0000</bug_when>
            <thetext>Created an attachment (id=108009)
a different patch for automake

</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-01-24 11:31:25 0000</bug_when>
            <thetext>#emerge --info
Portage 2.1.2 (default-linux/x86/no-nptl, gcc-4.1.1, glibc-2.5-r0, 2.6.19-gentoo-r4-smp i686)
=================================================================
System uname: 2.6.19-gentoo-r4-smp i686 Intel(R) Xeon(TM) CPU 3.06GHz
Gentoo Base System version 1.12.9
Timestamp of tree: Fri, 19 Jan 2007 01:47:01 +0000
dev-java/java-config: 1.3.7, 2.0.31-r3
dev-lang/python:     2.4.4
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.18.1
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.19.2-r1
ACCEPT_KEYWORDS=&quot;x86 ~x86&quot;
AUTOCLEAN=&quot;yes&quot;
CBUILD=&quot;i686-pc-linux-gnu&quot;
CFLAGS=&quot;-march=pentium4 -O2 -fomit-frame-pointer -pipe&quot;
CHOST=&quot;i686-pc-linux-gnu&quot;
CONFIG_PROTECT=&quot;/etc /usr/share/X11/xkb&quot;
CONFIG_PROTECT_MASK=&quot;/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/terminfo /etc/texmf/web2c&quot;
CXXFLAGS=&quot;-march=pentium4 -O2 -fomit-frame-pointer -pipe&quot;
DISTDIR=&quot;/usr/portage/distfiles&quot;
FEATURES=&quot;autoconfig distlocks metadata-transfer sandbox sfperms strict&quot;
GENTOO_MIRRORS=&quot;http://mirror.switch.ch/ftp/mirror/gentoo http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo&quot;
MAKEOPTS=&quot;-j3&quot;
PKGDIR=&quot;/usr/portage/packages&quot;
PORTAGE_RSYNC_OPTS=&quot;--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages&quot;
PORTAGE_TMPDIR=&quot;/var/tmp&quot;
PORTDIR=&quot;/usr/portage&quot;
PORTDIR_OVERLAY=&quot;/usr/local/portage&quot;
SYNC=&quot;rsync://rsync.europe.gentoo.org/gentoo-portage&quot;
USE=&quot;X apm arts berkdb bitmap-fonts cli cracklib crypt cups dlloader dri eds emboss encode foomaticdb fortran gdbm gif gpm gstreamer gtk gtk2 iconv imlib ipv6 isdnlog jpeg kde ldap libg++ libwww mad mikmod motif mp3 mpeg mysql ncurses nls ogg opengl oss pam pcre perl png pppd python qt3 qt4 quicktime readline reflection session spell spl ssl tcpd threads truetype truetype-fonts type1-fonts vorbis x86 xml xorg xv zlib&quot; ALSA_CARDS=&quot;ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci&quot; ALSA_PCM_PLUGINS=&quot;adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol&quot; ELIBC=&quot;glibc&quot; INPUT_DEVICES=&quot;keyboard mouse evdev&quot; KERNEL=&quot;linux&quot; LCD_DEVICES=&quot;bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text&quot; USERLAND=&quot;GNU&quot; VIDEO_CARDS=&quot;apm ark ati chips cirrus cyrix dummy fbdev glint i128 i740 i810 imstt mga neomagic nsc nv rendition s3 s3virge savage siliconmotion sis sisusb tdfx tga trident tseng v4l vesa vga via vmware voodoo&quot;
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS
</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>dberkholz@gentoo.org</who>
            <bug_when>2007-05-11 23:42:25 0000</bug_when>
            <thetext>Woops, I totally lost track of this bug. Not sure how that happened..</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>dberkholz@gentoo.org</who>
            <bug_when>2007-06-22 23:11:52 0000</bug_when>
            <thetext>Fixed, thanks for your patience!</thetext>
          </long_desc>
          <long_desc isprivate="0">
            <who>daweonline@gmail.com</who>
            <bug_when>2007-06-23 09:53:24 0000</bug_when>
            <thetext>(In reply to comment #6)
&gt; Fixed, thanks for your patience!
&gt; 

:-) Great! </thetext>
          </long_desc>
      
          <attachment
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          >
            <attachid>108006</attachid>
            <date>2007-01-24 11:30 0000</date>
            <desc>shelx emerge log</desc>
            <filename>emerge.log</filename>
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            <attachid>108008</attachid>
            <date>2007-01-24 11:30 0000</date>
            <desc>automake out</desc>
            <filename>automake-15678.out</filename>
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            <attachid>108009</attachid>
            <date>2007-01-24 11:31 0000</date>
            <desc>a different patch for automake</desc>
            <filename>20060317-autotool.patch</filename>
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</bugzilla>