131957 2006-05-01 13:27 0000 scilab doesn't link -lpthread for threaded atlas 2006-06-24 14:51:47 0000 1 1 1 Unclassified Gentoo Linux Applications 2005.0 All Linux RESOLVED FIXED P2 normal --- 1 paulphilippe@yahoo.com sci@gentoo.org gralves@gmail.com rose@rz.uni-potsdam.de paulphilippe@yahoo.com 2006-05-01 13:27:56 0000 Hi, Scilab will no longer compile because of the following error messages (note that I have recompile the entire system and world twice already and I still get the errors (emerge -eN system && emerge -eN world)) linking /usr/lib/gcc/i686-pc-linux-gnu/3.4.6/../../../../i686-pc-linux-gnu/bin/ld: warning: creating a DT_TEXTREL in object. make[1]: Leaving directory `/var/tmp/portage/scilab-3.1.1-r3/work/scilab-3.1.1/routines/Javasci' linking /var/tmp/portage/scilab-3.1.1-r3/work/scilab-3.1.1/pvm3/lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead /var/tmp/portage/scilab-3.1.1-r3/work/scilab-3.1.1/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x79): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-3.1.1-r3/work/scilab-3.1.1/libs/sun.a(link.o): In function `CreateShared': link.c:(.text+0x536): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/libatlas.so.0: undefined reference to `pthread_create' /usr/lib/libatlas.so.0: undefined reference to `pthread_join' collect2: ld returned 1 exit status make: *** [bin/scilex] Error 1 !!! ERROR: sci-mathematics/scilab-3.1.1-r3 failed. Call stack: ebuild.sh, line 1525: Called dyn_compile ebuild.sh, line 928: Called src_compile scilab-3.1.1-r3.ebuild, line 74: Called die !!! (no error message) !!! If you need support, post the topmost build error, and the call stack if relevant. Steps: 1) emerge scilab 2) building and compiling stops at linking Reproducibility: ALWAYS Expected result: compile complete and install Paul booyah ~ # emerge --info Portage 2.1_pre9-r4 (default-linux/x86/2005.0, gcc-3.4.6, glibc-2.4-r1, 2.6.14-gentoo-r2 i686) ================================================================= System uname: 2.6.14-gentoo-r2 i686 Intel(R) Pentium(R) 4 CPU 2.80GHz Gentoo Base System version 1.12.0_pre18 dev-lang/python: 2.3.5, 2.4.2-r1 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.16.1-r2 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r5 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4 -O3 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/X11/xkb /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/eselect/compiler /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-march=pentium4 -O3 -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache cvs distcc distlocks metadata-transfer noauto sandbox sfperms strict userpriv usersandbox" GENTOO_MIRRORS="ftp://ftp.nrc.ca/pub/systems/linux/gentoo/ http://mirror.tucdemonic.org/gentoo/ ftp://gentoo.netnitco.net/pub/mirrors/gentoo/source/ http://gentoo.netnitco.net ftp://ftp.ussg.iu.edu/pub/linux/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="x86 X aac aalib alsa apm arts avi berkdb bitmap-fonts cli crypt cups divx4linux dri eds emboss encode faad2 fbdev foomaticdb fortran gcj gdbm gif gnome gpm gstreamer gtk gtk2 imlib ipv6 isdnlog java jpeg kde libg++ libwww live mad mikmod motif mp3 mpeg nas ncurses network nls nptl nptlonly ogg oggvorbis opengl oss pam pcre pdflib perl png pppd python qt quicktime readline reflection sdl session spell spl ssl tcpd truetype truetype-fonts type1-fonts vorbis win32codecs xml2 xmms xorg xv zlib elibc_glibc input_devices_keyboard input_devices_mouse kernel_linux userland_GNU video_cards_vesa video_cards_vga video_cards_fbdev video_cards_nv video_cards_nvidia" Unset: ASFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS markusle@gentoo.org 2006-05-01 15:49:42 0000 (In reply to comment #0) > /usr/lib/libatlas.so.0: undefined reference to `pthread_create' > /usr/lib/libatlas.so.0: undefined reference to `pthread_join' This looks more like a problem with atlas rather than scilab itself. What version of blas-atlas do you have installed? Does recompiling blas-atlas once more help? Thanks, Markus paulphilippe@yahoo.com 2006-05-01 18:52:16 0000 (In reply to comment #1) > (In reply to comment #0) > > /usr/lib/libatlas.so.0: undefined reference to `pthread_create' > > /usr/lib/libatlas.so.0: undefined reference to `pthread_join' > > This looks more like a problem with atlas rather than scilab itself. > What version of blas-atlas do you have installed? Does recompiling > blas-atlas once more help? > > Thanks, > Markus Nope it doesn't. I have recompiled blas-atlas and it doesn't help. I have blas-atlas-3.7.11 installed. Paul > markusle@gentoo.org 2006-05-01 20:54:16 0000 It is probably related to glibc-2.4, but unfortunately I can't test this at the moment. Likely, we need a -lpthread somewhere. Would you mind giving the currently masked scilab-4.0 a try and see what happens? It will go into ~x86 very soon and I'd rather start debugging your problem in the newer version. Thanks, Markus paulphilippe@yahoo.com 2006-05-02 10:45:29 0000 (In reply to comment #3) > It is probably related to glibc-2.4, but unfortunately I can't test this > at the moment. Likely, we need a -lpthread somewhere. Would you > mind giving the currently masked scilab-4.0 a try and see what > happens? It will go into ~x86 very soon and I'd rather start debugging your > problem in the newer version. > > Thanks, > Markus > Will do! Thanks Paul paulphilippe@yahoo.com 2006-05-02 10:50:41 0000 (In reply to comment #4) > (In reply to comment #3) > > It is probably related to glibc-2.4, but unfortunately I can't test this > > at the moment. Likely, we need a -lpthread somewhere. Would you > > mind giving the currently masked scilab-4.0 a try and see what > > happens? It will go into ~x86 very soon and I'd rather start debugging your > > problem in the newer version. > > > > Thanks, > > Markus > > > > Will do! > > Thanks > Paul > Ok I just tried installing scilab-4.0 and it gives me the exact same error but there aren't as many error messages! /var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x84): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/os_specific.a(link.o): In function `CreateShared': link.c:(.text+0x197): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/libatlas.so.0: undefined reference to `pthread_create' /usr/lib/libatlas.so.0: undefined reference to `pthread_join' collect2: ld returned 1 exit status make: *** [bin/scilex] Error 1 !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_compile ebuild.sh, line 928: Called src_compile scilab-4.0.ebuild, line 85: Called die !!! emake failed !!! If you need support, post the topmost build error, and the call stack if relevant. Hope this helps! Paul markusle@gentoo.org 2006-05-02 19:50:47 0000 Created an attachment (id=86042) small atlas compile test Hi, Thank you very much for your efforts and giving scilab-4.0 a shot. I still think the problem is glibc-2.4 and atlas related. Could you please try to compile the attached small C++ code with g++ atlas_test.cpp /usr/lib/libatlas.so and report back if that works and runs. Thanks, Markus paulphilippe@yahoo.com 2006-05-02 20:01:19 0000 (In reply to comment #6) > Created an attachment (id=86042) [edit] > small atlas compile test > > Hi, > > Thank you very much for your efforts and giving scilab-4.0 a shot. > I still think the problem is glibc-2.4 and atlas related. Could you > please try to compile the attached small C++ code with > > g++ atlas_test.cpp /usr/lib/libatlas.so > > and report back if that works and runs. > > Thanks, > Markus > Hi, Here's is what I get by performing the following: " user@booyah ~ $ g++ atlas_test.cpp /usr/lib/libatlas.so /usr/lib/libatlas.so: undefined reference to `pthread_create' /usr/lib/libatlas.so: undefined reference to `pthread_join' collect2: ld returned 1 exit status user@booyah ~ $ " Unfortunetely, I have no knowledge whatsoever in C++ ... wish I could be of more help!! Thanks for the help so far Cheers, Paul markusle@gentoo.org 2006-05-04 07:41:58 0000 Hi Paul, Thank you very much for testing. As I suspected, this is not scilab's fault but rather a problem with the atlas library that somehow has trouble finding glibc's pthread stuff, probably due to glibc-2.4 (I changed the subject accordingly). I'll have to dig into this some more to figure out what is going wrong and might ask you to test a few things. I'll see if in the meantime I can prevent scilab from linking against atlas so you can compile it. Thanks, Markus dberkholz@gentoo.org 2006-05-04 09:38:06 0000 The easy fix is to just add -lpthread to your linker flags. paulphilippe@yahoo.com 2006-05-04 10:05:02 0000 (In reply to comment #9) > The easy fix is to just add -lpthread to your linker flags. > Ok, in what file? Paul markusle@gentoo.org 2006-05-04 15:47:49 0000 Created an attachment (id=86171) patch to link against pthread Hi Paul, Could you please try the attached patch for the scilab-4.0.ebuild and report back how far this gets you? Thanks, Markus paulphilippe@yahoo.com 2006-05-05 12:27:37 0000 (In reply to comment #11) > Created an attachment (id=86171) [edit] > patch to link against pthread > > Hi Paul, > > Could you please try the attached patch for the scilab-4.0.ebuild > and report back how far this gets you? > > Thanks, > Markus > hi Markus, I applied the patch to the scilab-4.0 ebuild the compilation failed with the same error messages linking /var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x84): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/os_specific.a(link.o): In function `CreateShared': link.c:(.text+0x197): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/libatlas.so.0: undefined reference to `pthread_create' /usr/lib/libatlas.so.0: undefined reference to `pthread_join' collect2: ld returned 1 exit status make: *** [bin/scilex] Error 1 !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_compile ebuild.sh, line 928: Called src_compile scilab-4.0.ebuild, line 85: Called die !!! emake failed !!! If you need support, post the topmost build error, and the call stack if relevant. Paul-Philippe dberkholz@gentoo.org 2006-05-05 12:53:02 0000 Can you paste the last full compilation line above that? It looks as if -lpthread still isn't getting passed, from that error. paulphilippe@yahoo.com 2006-05-05 13:01:55 0000 (In reply to comment #13) > Can you paste the last full compilation line above that? It looks as if > -lpthread still isn't getting passed, from that error. > Here it is ranlib libpvmtrc.a gcc -O -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o tracer tracer.o cmd.o trcglob.o -L../../lib/LINUX -L../../tracer/LINUX -lpvmtrc -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead gcc -O -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c -I../../tracer -I../../include -I../../tracer ../../tracer/trcsort.c gcc -O -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o trcsort trcsort.o -L../../lib/LINUX -L../../tracer/LINUX -lpvmtrc -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead make[3]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/tracer/LINUX' done building tracer building console cd console; ../lib/aimk CC=gcc F77=f77 install making in LINUX/ for LINUX make[3]: Entering directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/console/LINUX' gcc -DIMA_LINUX -I../../include -I../../tracer -I../../src -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../console/cons.c gcc -DIMA_LINUX -I../../include -I../../tracer -I../../src -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../console/cmds.c gcc -DIMA_LINUX -I../../include -I../../tracer -I../../src -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../console/job.c gcc -DIMA_LINUX -I../../include -I../../tracer -I../../src -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../console/trc.c gcc -DIMA_LINUX -I../../include -I../../tracer -I../../src -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o pvm cons.o cmds.o job.o trc.o -L../../tracer/LINUX -L../../lib/LINUX -lpvmtrc -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead cp pvm ../../lib/LINUX make[3]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/console/LINUX' done building console building group server and library cd pvmgs; ../lib/aimk CC=gcc F77=f77 install making in LINUX/ for LINUX make[3]: Entering directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/pvmgs/LINUX' mkdir ../../bin/LINUX gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvm_gstat.c gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvmgsu_core.c gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvmgsu_aux.c gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvmgs_func.c rm -f libgpvm3.a ar cr libgpvm3.a pvmgsu_core.o pvmgsu_aux.o pvmgs_func.o case xt in xt ) echo ranlib; ranlib libgpvm3.a ;; esac ranlib gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o pvm_gstat pvm_gstat.o libgpvm3.a -L../../lib/LINUX -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead cp pvm_gstat ../../bin/LINUX gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvmgs_core.c gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o pvmgs pvmgs_core.o pvmgs_func.o -L../../lib/LINUX -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead cp pvmgs ../../bin/LINUX gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -c ../../pvmgs/pvmgroups.c gcc -I../../include -I../../src -DIMA_LINUX -DSYSVSIGNAL -DNOWAIT3 -DRSHCOMMAND=\"/usr/bin/rsh\" -DNEEDENDIAN -DFDSETNOTSTRUCT -DHASERRORVARS -DCTIMEISTIMET -DSYSERRISCONST -DNOTMPNAM -o pvmgroups pvmgroups.o libgpvm3.a -L../../lib/LINUX -lpvm3 ../../lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead cp pvmgroups ../../bin/LINUX cp libgpvm3.a ../../lib/LINUX case xt in xt ) echo ranlib; ranlib ../../lib/LINUX/libgpvm3.a ;; esac ranlib cp pvmgs ../../lib/LINUX make[3]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/pvmgs/LINUX' done building group server and library make[2]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3' make[1]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3' making all in routines/Javasci... make[1]: Entering directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/Javasci' make[2]: Entering directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/Javasci/classes' make[2]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/Javasci/classes' gcc -march=pentium4 -O3 -pipe -fomit-frame-pointer `pkg-config gtk+-2.0 --cflags` -I/opt/blackdown-jdk-1.4.2.03/include -I/opt/blackdown-jdk-1.4.2.03/include/linux -c -o javasci_SciStringArray.o javasci_SciStringArray.c gcc -march=pentium4 -O3 -pipe -fomit-frame-pointer `pkg-config gtk+-2.0 --cflags` -I/opt/blackdown-jdk-1.4.2.03/include -I/opt/blackdown-jdk-1.4.2.03/include/linux -c -o javasci_globals.o javasci_globals.c gcc -march=pentium4 -O3 -pipe -fomit-frame-pointer `pkg-config gtk+-2.0 --cflags` -I/opt/blackdown-jdk-1.4.2.03/include -I/opt/blackdown-jdk-1.4.2.03/include/linux -c -o javasci_Scilab.o javasci_Scilab.c gcc -march=pentium4 -O3 -pipe -fomit-frame-pointer `pkg-config gtk+-2.0 --cflags` -I/opt/blackdown-jdk-1.4.2.03/include -I/opt/blackdown-jdk-1.4.2.03/include/linux -c -o javasci_SciDoubleArray.o javasci_SciDoubleArray.c gcc -march=pentium4 -O3 -pipe -fomit-frame-pointer `pkg-config gtk+-2.0 --cflags` -I/opt/blackdown-jdk-1.4.2.03/include -I/opt/blackdown-jdk-1.4.2.03/include/linux -c -o fix.o fix.c Creation of ../../bin/libjavasci.so linking /usr/lib/gcc/i686-pc-linux-gnu/3.4.6/../../../../i686-pc-linux-gnu/bin/ld: warning: creating a DT_TEXTREL in object. make[1]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/Javasci' linking /var/tmp/portage/scilab-4.0/work/scilab-4.0/pvm3/lib/LINUX/libpvm3.a(lpvmgen.o): In function `pvmlogperror': lpvmgen.c:(.text+0x31a): warning: `sys_errlist' is deprecated; use `strerror' or `strerror_r' instead lpvmgen.c:(.text+0x311): warning: `sys_nerr' is deprecated; use `strerror' or `strerror_r' instead /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x84): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/os_specific.a(link.o): In function `CreateShared': link.c:(.text+0x197): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/libatlas.so.0: undefined reference to `pthread_create' /usr/lib/libatlas.so.0: undefined reference to `pthread_join' collect2: ld returned 1 exit status make: *** [bin/scilex] Error 1 !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_compile ebuild.sh, line 928: Called src_compile scilab-4.0.ebuild, line 85: Called die !!! emake failed !!! If you need support, post the topmost build error, and the call stack if relevant. Hope this helps Paul gralves@gmail.com 2006-05-05 16:56:20 0000 It didn't work for me also: =================================== g77 -c -o i_m_i.o i_m_i.f g77 -c -o i_r_i.o i_r_i.f g77 -c -o i_l_i.o i_l_i.f g77 -c -o i_x_i.o i_x_i.f g77 -c -o i_d_i.o i_d_i.f g77 -c -o i_q_i.o i_q_i.f g77 -c -o i_t.o i_t.f g77 -c -o i_logic.o i_logic.f g77 -c -o i_sum.o i_sum.f g77 -c -o i_cumsum.o i_cumsum.f g77 -c -o i_prod.o i_prod.f g77 -c -o i_cumprod.o i_cumprod.f g77 -c -o i_convert.o i_convert.f g77 -c -o i_abs.o i_abs.f g77 -c -o i_diag.o i_diag.f g77 -c -o i_tril.o i_tril.f g77 -c -o i_triu.o i_triu.f g77 -c -o i_kron.o i_kron.f g77 -c -o i_maxi.o i_maxi.f i_maxi.f: In subroutine `i_maxi': i_maxi.f:193: warning: call tpconv(iti,it,1,istk(lr1),1,s,1) 1 i_maxi.f:196: (continued): call tpconv(iti,it,m*n,istk(lr1),1,istk(lv),1) 2 Argument #6 of `tpconv' is one type at (2) but is some other type at (1) [info -f g77 M GLOBALS] g77 -c -o i_mini.o i_mini.f i_mini.f: In subroutine `i_mini': i_mini.f:193: warning: call tpconv(iti,it,1,istk(lr1),1,s,1) 1 i_mini.f:196: (continued): call tpconv(iti,it,m*n,istk(lr1),1,istk(lv),1) 2 Argument #6 of `tpconv' is one type at (2) but is some other type at (1) [info -f g77 M GLOBALS] g77 -c -o readxbm.o readxbm.f g77 -c -o i_matrix.o i_matrix.f Creation of ../../libs/int.a make[2]: Saindo do diret gralves@gmail.com 2006-05-05 16:56:20 0000 It didn't work for me also: =================================== g77 -c -o i_m_i.o i_m_i.f g77 -c -o i_r_i.o i_r_i.f g77 -c -o i_l_i.o i_l_i.f g77 -c -o i_x_i.o i_x_i.f g77 -c -o i_d_i.o i_d_i.f g77 -c -o i_q_i.o i_q_i.f g77 -c -o i_t.o i_t.f g77 -c -o i_logic.o i_logic.f g77 -c -o i_sum.o i_sum.f g77 -c -o i_cumsum.o i_cumsum.f g77 -c -o i_prod.o i_prod.f g77 -c -o i_cumprod.o i_cumprod.f g77 -c -o i_convert.o i_convert.f g77 -c -o i_abs.o i_abs.f g77 -c -o i_diag.o i_diag.f g77 -c -o i_tril.o i_tril.f g77 -c -o i_triu.o i_triu.f g77 -c -o i_kron.o i_kron.f g77 -c -o i_maxi.o i_maxi.f i_maxi.f: In subroutine `i_maxi': i_maxi.f:193: warning: call tpconv(iti,it,1,istk(lr1),1,s,1) 1 i_maxi.f:196: (continued): call tpconv(iti,it,m*n,istk(lr1),1,istk(lv),1) 2 Argument #6 of `tpconv' is one type at (2) but is some other type at (1) [info -f g77 M GLOBALS] g77 -c -o i_mini.o i_mini.f i_mini.f: In subroutine `i_mini': i_mini.f:193: warning: call tpconv(iti,it,1,istk(lr1),1,s,1) 1 i_mini.f:196: (continued): call tpconv(iti,it,m*n,istk(lr1),1,istk(lv),1) 2 Argument #6 of `tpconv' is one type at (2) but is some other type at (1) [info -f g77 M GLOBALS] g77 -c -o readxbm.o readxbm.f g77 -c -o i_matrix.o i_matrix.f Creation of ../../libs/int.a make[2]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/int' making all in routines/gtksci... make[2]: Entrando no diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/gtksci' gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o io.o io.c gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o menus.o menus.c gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o x_main.o x_main.c gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o about.o about.c gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o queue.o queue.c gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` `pkg-config libgtkhtml-2.0 --cflags` -c helpbrowser.c In file included from helpbrowser.c:7: helpbrowser-gtk2.c: In function `io_handler': helpbrowser-gtk2.c:475: warning: passing arg 4 of `g_io_channel_read_chars' from incompatible pointer type helpbrowser-gtk2.c:491: warning: passing arg 4 of `g_io_channel_read_chars' from incompatible pointer type gcc -march=athlon64 -O2 -pipe `pkg-config gtk+-2.0 --cflags` -c -o zzledt-rl.o zzledt-rl.c Creation of ../../libs/gtksci.a make[2]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/gtksci' making all in routines/gzvt2... make[2]: Entrando no diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/gzvt2' gcc -o ../../bin/zterm vte.c `pkg-config vte gtk+-2.0 --cflags --libs` make[2]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines/gzvt2' make[1]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/routines' linking /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/system.a(scicurdir.o): In function `scigetcwd_': scicurdir.c:(.text+0x94): warning: the `getwd' function is dangerous and should not be used. /var/tmp/portage/scilab-4.0/work/scilab-4.0/libs/os_specific.a(link.o): In function `CreateShared': link.c:(.text+0x2e3): warning: the use of `mktemp' is dangerous, better use `mkstemp' /usr/lib/libatlas.so.0: undefined reference to `pthread_create' /usr/lib/libatlas.so.0: undefined reference to `pthread_join' collect2: ld returned 1 exit status make: ** [bin/scilex] Erro 1 !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_compile ebuild.sh, line 928: Called src_compile scilab-4.0.ebuild, line 85: Called die !!! emake failed !!! If you need support, post the topmost build error, and the call stack if relevant. ================================ ==========einfo================= Portage 2.1_pre10-r2 (default-linux/amd64/2006.0, gcc-3.4.6, glibc-2.4-r2, 2.6.15-gentoo-r8 x86_64) ================================================================= System uname: 2.6.15-gentoo-r8 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 3800+ Gentoo Base System version 1.12.0_pre19 ccache version 2.4 [enabled] dev-lang/python: 2.4.3-r1 dev-util/ccache: 2.4-r1 dev-util/confcache: [Not Present] sys-apps/sandbox: 1.2.18 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.16.1-r2 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r3 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/3/share/config /usr/share/X11/xkb /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/eselect/compiler /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-march=athlon64 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig buildpkg ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="pt_BR.UTF-8" LC_ALL="pt_BR.UTF-8" LINGUAS="en_US en pt_BR pt fr" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 X aac alsa artworkextra avi bash-completion berkdb bitmap-fonts bzip2 cairo caps cdr cli crypt cscope cups dbus djvu dri dts dvd dvi editor eds effects emboss encode firefox flac foomaticdb fortran gaim gdb gif gimp glut gnome gphoto2 gpm graphviz gstreamer gtk gtk2 guile hal howl imlib inkjar ipv6 isdnlog java joystick jpeg jpeg2k libg++ libnotify logrotate lzw lzw-tiff mad mp3 mpeg music musicbrainz nautilus ncurses nls nptl nptlonly nsplugin offensive ogg opengl pam pcre pdflib perl pic png postgres ppds pppd python qt quicktime readline reflection scanner sdl session spell spl ssl svg tagwriting tcpd theora threads tiff timidity truetype-fonts type1 type1-fonts unicode usb userlocales visualization vorbis xorg xpm xv zlib elibc_glibc input_devices_keyboard input_devices_mouse kernel_linux linguas_en_US linguas_en linguas_pt_BR linguas_pt linguas_fr userland_GNU video_cards_fglrx video_cards_vesa" Unset: ASFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS ===================== markusle@gentoo.org 2006-05-06 20:44:14 0000 Created an attachment (id=86332) second attempt for patch Hi, Thanks all for testing. Please give my second patch attempt a try. I've passed -lpthread specifically to the fortran linking step. Maybe that will help. Thanks, Markus gralves@gmail.com 2006-05-07 14:58:15 0000 Now it compiled but failed to install : ============================================ make[2]: Saindo do diret gralves@gmail.com 2006-05-07 14:58:15 0000 Now it compiled but failed to install : ============================================ make[2]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man/fr' make[1]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man' >>> Source compiled. >>> Test phase [not enabled]: sci-mathematics/scilab-4.0 >>> Install scilab-4.0 into /var/tmp/portage/scilab-4.0/image/ category sci-mathematics tar: pvm3/lib//pvmd3: Não é possível stat: Arquivo ou diretório não encontrado tar: Saída por erro atrasada pelos erros anteriores tar: pvm3/lib//pvmgs: Não é possível stat: Arquivo ou diretório não encontrado tar: Saída por erro atrasada pelos erros anteriores tar: pvm3/bin//*: Não é possível stat: Arquivo ou diretório não encontrado tar: Saída por erro atrasada pelos erros anteriores install -d /var/tmp/portage/scilab-4.0/image///usr/bin rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/scilab ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/scilab /var/tmp/portage/scilab-4.0/image///usr/bin/scilab rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci /var/tmp/portage/scilab-4.0/image///usr/bin/intersci rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci-n /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n /usr/local/portage/sci-mathematics/scilab/scilab-4.0.ebuild: line 93: /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/Path.incl: Arquivo ou diretório não encontrado strip: '/var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/scilex': No such file sed: não foi possível ler /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/Blpr: Arquivo ou diretório não encontrado !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_install ebuild.sh, line 1002: Called src_install scilab-4.0.ebuild, line 115: Called die !!! Failed to fix wrapper scripts !!! If you need support, post the topmost build error, and the call stack if relevant. ============================ paulphilippe@yahoo.com 2006-05-07 17:34:49 0000 (In reply to comment #17) > Now it compiled but failed to install : > ============================================ > make[2]: Saindo do diret paulphilippe@yahoo.com 2006-05-07 17:34:49 0000 (In reply to comment #17) > Now it compiled but failed to install : > ============================================ > make[2]: Saindo do diretório > `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man/fr' > make[1]: Saindo do diretório `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man' > >>> Source compiled. > >>> Test phase [not enabled]: sci-mathematics/scilab-4.0 > > >>> Install scilab-4.0 into /var/tmp/portage/scilab-4.0/image/ category sci-mathematics > tar: pvm3/lib//pvmd3: Não é possível stat: Arquivo ou diretório não encontrado > tar: Saída por erro atrasada pelos erros anteriores > tar: pvm3/lib//pvmgs: Não é possível stat: Arquivo ou diretório não encontrado > tar: Saída por erro atrasada pelos erros anteriores > tar: pvm3/bin//*: Não é possível stat: Arquivo ou diretório não encontrado > tar: Saída por erro atrasada pelos erros anteriores > install -d /var/tmp/portage/scilab-4.0/image///usr/bin > rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/scilab > ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/scilab > /var/tmp/portage/scilab-4.0/image///usr/bin/scilab > rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci > ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci > /var/tmp/portage/scilab-4.0/image///usr/bin/intersci > rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n > ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci-n > /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n > /usr/local/portage/sci-mathematics/scilab/scilab-4.0.ebuild: line 93: > /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/Path.incl: Arquivo ou > diretório não encontrado > strip: '/var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/scilex': No > such file > sed: não foi possível ler > /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/Blpr: Arquivo ou > diretório não encontrado > > !!! ERROR: sci-mathematics/scilab-4.0 failed. > Call stack: > ebuild.sh, line 1525: Called dyn_install > ebuild.sh, line 1002: Called src_install > scilab-4.0.ebuild, line 115: Called die > > !!! Failed to fix wrapper scripts > !!! If you need support, post the topmost build error, and the call stack if > relevant. > ============================ > Hi, Actually I am having trouble applying the second patch. Markus, can you tell me the command to apply the patch? Paul markusle@gentoo.org 2006-05-08 05:13:52 0000 (In reply to comment #17) > Now it compiled but failed to install : Thanks much for testing and at least partial success :) I'll have to look into what's going wrong during your install (any chance you could provide the error output in English, btw?). @Paul: To apply the patch cd into the directory with the scilab-4.0.ebuild. Then do a "patch -p0 < [path to scilab-4.0-ebuild-pthread.patch]". Thanks, Markus paulphilippe@yahoo.com 2006-05-08 08:38:20 0000 (In reply to comment #19) > (In reply to comment #17) > > Now it compiled but failed to install : > > Thanks much for testing and at least partial success :) I'll have to look > into what's going wrong during your install (any chance you could > provide the error output in English, btw?). > > @Paul: > > To apply the patch cd into the directory with the scilab-4.0.ebuild. > Then do a "patch -p0 < [path to scilab-4.0-ebuild-pthread.patch]". > > Thanks, > Markus > Hi, I couldn't apply the patch booyah scilab # patch -i scilab-4.0-ebuild-pthread.patch scilab-4.0.ebuild patching file scilab-4.0.ebuild Hunk #1 FAILED at 64. 1 out of 1 hunk FAILED -- saving rejects to file scilab-4.0.ebuild.rej booyah scilab # Don't know exactly what's wrong but I couldn't get the patch applied. Paul markusle@gentoo.org 2006-05-08 15:36:50 0000 (In reply to comment #20) > Don't know exactly what's wrong but I couldn't get the patch applied. Works fine here! Are you sure you're using the original scilab-4.0.ebuild and not an already changed version? In any case, you could always change it by hand since it involves only 2 lines. Please let me know how that goes. Best, Markus gralves@gmail.com 2006-05-08 23:58:30 0000 (In reply to comment #19) > (In reply to comment #17) > > Now it compiled but failed to install : > > Thanks much for testing and at least partial success :) I'll have to look > into what's going wrong during your install (any chance you could > provide the error output in English, btw?). Sorry... I am so used to see English+Portuguese output mixed together that I barely notice then anymore... Processing file TCL_GetVar.xml dt=getdate(x) x must be >0. Processing file TCL_SetVar.xml dt=getdate(x) x must be >0. Processing file TCL_CreateSlave.xml dt=getdate(x) x must be >0. Processing file TCL_ExistVar.xml dt=getdate(x) x must be >0. Processing file TCL_UnsetVar.xml dt=getdate(x) x must be >0. Processing file TCL_UpVar.xml dt=getdate(x) x must be >0. Processing file TK_EvalFile.xml dt=getdate(x) x must be >0. Processing file uicontrol.xml dt=getdate(x) x must be >0. Processing file TK_GetVar.xml dt=getdate(x) x must be >0. Processing file TK_SetVar.xml dt=getdate(x) x must be >0. Processing file TCL_GetVersion.xml dt=getdate(x) x must be >0. Processing file findobj.xml dt=getdate(x) x must be >0. Processing file uimenu.xml dt=getdate(x) x must be >0. Processing file close.xml dt=getdate(x) x must be >0. Processing file figure.xml dt=getdate(x) x must be >0. Processing chapter /var/tmp/portage/scilab-4.0/work/scilab-4.0/man/fr/java Processing file SciDoubleArray.xml dt=getdate(x) x must be >0. Processing file SciDouble.xml dt=getdate(x) x must be >0. Processing file Scilab.xml dt=getdate(x) x must be >0. Processing file SciStringArray.xml dt=getdate(x) x must be >0. Processing file SciString.xml dt=getdate(x) x must be >0. Processing file javasci.xml dt=getdate(x) x must be >0. Creating index.htm Creating contents.htm make[2]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man/fr' make[1]: Leaving directory `/var/tmp/portage/scilab-4.0/work/scilab-4.0/man' >>> Source compiled. >>> Test phase [not enabled]: sci-mathematics/scilab-4.0 >>> Install scilab-4.0 into /var/tmp/portage/scilab-4.0/image/ category sci-mathematics tar: pvm3/lib//pvmd3: Cannot stat: No such file or directory tar: Error exit delayed from previous errors tar: pvm3/lib//pvmgs: Cannot stat: No such file or directory tar: Error exit delayed from previous errors tar: pvm3/bin//*: Cannot stat: No such file or directory tar: Error exit delayed from previous errors install -d /var/tmp/portage/scilab-4.0/image///usr/bin rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/scilab ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/scilab /var/tmp/portage/scilab-4.0/image///usr/bin/scilab rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci /var/tmp/portage/scilab-4.0/image///usr/bin/intersci rm -f /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n ln -fs /var/tmp/portage/scilab-4.0/image///usr/lib/scilab-4.0/bin/intersci-n /var/tmp/portage/scilab-4.0/image///usr/bin/intersci-n /usr/local/portage/sci-mathematics/scilab/scilab-4.0.ebuild: line 93: /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/Path.incl: No such file or directory strip: '/var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/scilex': No such file sed: can't read /var/tmp/portage/scilab-4.0/image//usr/lib64/scilab-4.0/bin/Blpr: No such file or directory !!! ERROR: sci-mathematics/scilab-4.0 failed. Call stack: ebuild.sh, line 1525: Called dyn_install ebuild.sh, line 1002: Called src_install scilab-4.0.ebuild, line 115: Called die !!! Failed to fix wrapper scripts !!! If you need support, post the topmost build error, and the call stack if relevant. paulphilippe@yahoo.com 2006-05-16 12:56:49 0000 (In reply to comment #21) > (In reply to comment #20) > > Don't know exactly what's wrong but I couldn't get the patch applied. > > Works fine here! Are you sure you're using the original scilab-4.0.ebuild > and not an already changed version? In any case, you could always change > it by hand since it involves only 2 lines. Please let me know how that goes. > > Best, > Markus > Hi, Sorry for not replying earlier. It compiles fine now after re-syncing to obtain the original ebuild and applying the second patch. Now I'll test for functionality. Paul markusle@gentoo.org 2006-06-01 15:25:10 0000 (In reply to comment #22) Hi Gustavo, Are you still seeing these issues with the present version of scilab-4.0 in portage? Thanks, Markus gralves@gmail.com 2006-06-01 20:59:22 0000 (In reply to comment #24) I'm having a different issue right now: with the update to gcc 4.1, scilab fails to find my fortran compiler. > (In reply to comment #22) > > Hi Gustavo, > > Are you still seeing these issues with the present version > of scilab-4.0 in portage? > > Thanks, > Markus > gralves@gmail.com 2006-06-01 21:06:28 0000 (In reply to comment #25) My scilab troubles are reported at bug 135227. > (In reply to comment #24) > > I'm having a different issue right now: with the update to gcc 4.1, scilab > fails to find my fortran compiler. > > > (In reply to comment #22) > > > > Hi Gustavo, > > > > Are you still seeing these issues with the present version > > of scilab-4.0 in portage? > > > > Thanks, > > Markus > > > dberkholz@gentoo.org 2006-06-21 07:59:29 0000 Can this be closed? The fix is in the tree. gralves@gmail.com 2006-06-21 09:47:20 0000 I can't check this on my system since I have another scilab problem now. But if it works on other systems I think it is ok to close it. markusle@gentoo.org 2006-06-21 15:13:03 0000 I'll close this bug since it should be fixed. Hopefully I can have a look at Gustavo's problem reported in bug 135227 soon. 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