127784 2006-03-27 12:54 0000 sci-chemistry/gamess-20060222.2 fails to compile due to source/zunix.c:346: error: `CLK_TCK' undeclared 2006-03-28 09:59:18 0000 1 1 1 Unclassified Gentoo Linux Applications unspecified All Linux RESOLVED FIXED P2 normal --- 1 jak137@o2.pl markusle@gentoo.org jak137@o2.pl sci@gentoo.org jak137@o2.pl 2006-03-27 12:54:49 0000 It seems that using CLK_TCK is obsolete in glibc-2.4-r1 Similar bugs have been already resolved: http://bugs.gentoo.org/show_bug.cgi?id=126102#c2 http://bugs.gentoo.org/show_bug.cgi?id=126411 >>> Compiling source in /var/tmp/portage/gamess-20060222.2/work/gamess ... Mon Mar 27 22:30:37 CEST 2006 i686-pc-linux-gnu-gcc -c -DLINUX -m32 source/zunix.c source/zunix.c: In function `memget_': source/zunix.c:319: warning: return makes integer from pointer without a cast source/zunix.c: In function `etime_': source/zunix.c:346: error: `CLK_TCK' undeclared (first use in this function) source/zunix.c:346: error: (Each undeclared identifier is reported only once source/zunix.c:346: error: for each function it appears in.) unset echo mv: cannot stat `zunix.o': No such file or directory [.......] End of DDI compile script Mon Mar 27 22:33:40 CEST 2006 4.360u 1.360s 0:05.84 97.9% 0+0k 0+0io 2pf+0w Mon Mar 27 22:33:40 CEST 2006 GAMESS will be linked into the executable image gamess.00.x. chdir object g77 -o ../gamess.00.x gamess.o unport.o zunix.o aldeci.o algnci.o basccn.o basecp.o basext.o bashuz.o bashz2.o basn21.o basn31.o baspcn.o bassto.o ccaux.o ccqaux.o ccquad.o ccsdt.o chgpen.o cisgrd.o cosmo.o cphf.o cpmchf.o cprohf.o ddilib.o delocl.o demrpt.o dft.o dftaux.o dftexc.o dftfun.o dftgrd.o dftint.o dgeev.o dgesvd.o dmulti.o drc.o ecp.o ecpder.o ecplib.o ecppot.o efchtr.o efdrvr.o efgrda.o efgrdb.o efgrdc.o efgrd2.o efinp.o efinta.o efintb.o efelec.o efpaul.o efpcm.o efpcov.o efpfmo.o eigen.o eomcc.o ffield.o fmo.o fmogrd.o fmoint.o fmoio.o fmolib.o fmoprp.o frfmt.o fsodci.o globop.o gradex.o guess.o grd1.o grd2a.o grd2b.o grd2c.o gugdga.o gugdgb.o gugdm.o gugdm2.o gugdrt.o gugem.o gugsrt.o gvb.o hess.o hss1a.o hss1b.o hss2a.o hss2b.o inputa.o inputb.o inputc.o int1.o int2a.o int2b.o int2c.o int2d.o int2f.o int2g.o int2r.o int2s.o int2t.o int2u.o int2v.o int2w.o int2x.o iolib.o lagran.o local.o loccd.o locpol.o mcpinp.o mcpint.o mcpl10.o mcpl20.o mcpl30.o mcpl40.o mcpl50.o mcpl60.o mcpl70.o mcpl80.o mccas.o mcjac.o mcqdpt.o mcqdwt.o mcqud.o mcscf.o mctwo.o mdefp.o mexing.o mm23.o mp2.o mp2ddi.o mp2grd.o mpcdat.o mpcgrd.o mpcint.o mpcmol.o mpcmsc.o morokm.o mthlib.o nameio.o nmr.o ordint.o ormas1.o parley.o pcm.o pcmcav.o pcmcv2.o pcmder.o pcmdis.o pcmief.o pcmpol.o pcmvch.o prpel.o prplib.o prppop.o qeigen.o qfmm.o qmfm.o qrel.o raman.o rhfuhf.o rxncrd.o ryspol.o scflib.o scfmi.o scrf.o sobrt.o soffac.o solib.o sozeff.o statpt.o surf.o svpchg.o svpinp.o svpleb.o symorb.o symslc.o tdhf.o tdx.o tdxio.o tdxitr.o tdxni.o tdxprp.o trans.o trfdm2.o trnstn.o trudge.o umpddi.o vibanl.o vscf.o zapddi.o zheev.o zmatrx.o qmmm.o vbdum.o neostb.o ../ddi/libddi.a -lpthread -lblas g77: zunix.o: No such file or directory unset echo 0.052u 0.008s 0:00.06 83.3% 0+0k 0+0io 0pf+0w >>> Source compiled. >>> Test phase [not enabled]: sci-chemistry/gamess-20060222.2 >>> Install gamess-20060222.2 into /var/tmp/portage/gamess-20060222.2/image/ category sci-chemistry !!! dobin: gamess.00.x does not exist !!! ERROR: sci-chemistry/gamess-20060222.2 failed. Call stack: ebuild.sh, line 1526: Called dyn_install ebuild.sh, line 999: Called src_install gamess-20060222.2.ebuild, line 186: Called die !!! Failed installing binaries !!! If you need support, post the topmost build error, and the call stack if relevant. alkor ~ # emerge --info Portage 2.1_pre7-r1 (default-linux/x86/2006.0, gcc-3.4.6, glibc-2.4-r1, 2.6.14-gentoo-r5 i686) ================================================================= System uname: 2.6.14-gentoo-r5 i686 AMD Sempron(tm) 3000+ Gentoo Base System version 1.12.0_pre16 dev-lang/python: 2.4.2-r1 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.16.1-r2 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r3 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-Os -march=athlon-xp -mfpmath=sse -mmmx -msse -m3dnow -funroll-loops -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/grass60/etc /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-Os -march=athlon-xp -mfpmath=sse -mmmx -msse -m3dnow -funroll-loops -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LINGUAS="pl en de fr it ru ar" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="x86 3dnow X Xaw3d a52 aac alsa apache2 apm arts avi berkdb bidi bitmap-fonts blas bonobo bzip2 cairo cdparanoia cdr cli crypt cscope ctype cups dba dbm dri dts dv dvb dvd dvdr dvdread eds emacs emboss encode esd exif expat fastbuild fbcon ffmpeg fftw flac foomaticdb force-cgi-redirect fortran ftp gb gd gdbm gif ginac glut gmp gnome gphoto2 gpm gps gstreamer gtk gtk2 gtkhtml guile ieee1394 imagemagick imlib ipv6 jack java jpeg kde lapack lcms libg++ libgda libwww lm_sensors mad matroska mbox memlimit mikmod mime mmx mng mnogosearch mono motif mozilla mp3 mpeg msql mule ncurses netcdf nis nls nodrm nptl nptlonly nsplugin nvidia ocaml odbc ogg opengl oss pam pcmcia pcre pdflib perl php plotutils png portaudio posix postgres python qt quicktime readline recode ruby samba scanner sdl session simplexml sndfile soap sockets speex spell spl sse ssl svg szip tcltk tcpd tetex theora threads tiff tokenizer truetype truetype-fonts type1-fonts udev unicode usb vcd vhosts vorbis wifi win32codecs wmf wxwindows xine xinerama xml xmms xosd xpm xsl xv zeo zlib elibc_glibc kernel_linux linguas_pl linguas_en linguas_de linguas_fr linguas_it linguas_ru linguas_ar userland_GNU video_cards_nvidia" Unset: ASFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, LANG, LC_ALL, LDFLAGS markusle@gentoo.org 2006-03-27 13:59:17 0000 Created an attachment (id=83262) patch to fix missing CLK_TCK with glibc-2.4 Hi Jaroslaw, Thank you very much for your report. I am still using glibc-2.3.6 hence I didn't notice and it is, therefore, a little tricky to debug. Could you please try the patch and see if that fixes the problem. Thanks, Markus jak137@o2.pl 2006-03-28 07:00:32 0000 Hi Marcus, Your patch fixes the problem. Compilation is OK, test results seem to be correct too. I have not checked if the timing is as it shoud be, as for all the examples I get TOTAL WALL CLOCK TIME= 0.0 SECONDS and I don't have a bigger inupt ready... Thanks, Jarek markusle@gentoo.org 2006-03-28 09:59:18 0000 Hi Jarek, Thank you very much for testing the patch and I have just committed it to portage CVS. 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