11498 2002-12-02 15:00 0000 New bioperl-1.0.2.ebuild w/ new dependencies 2002-12-22 10:49:09 0000 1 1 1 Unclassified Gentoo Linux Ebuilds unspecified All Linux RESOLVED FIXED P2 enhancement --- 11497 1 gontran@gontran.net mcummings@gentoo.org gontran@gontran.net 2002-12-02 15:00:31 0000 I'm pretty excited about this ebuild. I track the bioperl project listserve and use it for my work, however I'm not a developer there. I would, however, be happy to maintain this ebuild (and the bioperl-cvs version) for the next few years. May be some formatting issues or something about perl*.eclasses that I didn't grok. Do let me know and I can fixup. thx, Gontran gontran@gontran.net 2002-12-02 15:01:47 0000 Created an attachment (id=6140) current stable bioperl-live gontran@gontran.net 2002-12-02 15:03:02 0000 Created an attachment (id=6141) File-Temp-0.12.ebuild gontran@gontran.net 2002-12-02 15:03:42 0000 Created an attachment (id=6142) Graph-0.20101.ebuild for bioperl-cvs gontran@gontran.net 2002-12-02 15:04:16 0000 Created an attachment (id=6143) Heap-0.50.ebuild dep for Graph gontran@gontran.net 2002-12-02 15:04:48 0000 Created an attachment (id=6144) SOAP-Lite-0.55.ebuild gontran@gontran.net 2002-12-02 15:05:45 0000 Created an attachment (id=6145) Text-Shellwords-1.00.ebuild Lincoln Stein's Text-Shellwords, needed for -cvs, used in stable. gontran@gontran.net 2002-12-02 15:06:31 0000 Created an attachment (id=6146) XML-Twig-3.09.ebuild dep for stable and -cvs. gontran@gontran.net 2002-12-02 15:07:31 0000 Created an attachment (id=6147) bioperl-cvs-20021202.ebuild bioperl-cvs ebuild which depends on cvs.ebuild patch submitted in #11497 gontran@gontran.net 2002-12-02 15:09:08 0000 Created an attachment (id=6148) bioperl-1.0.2.ebuild properly named and mimed, obsoletes attachment 6140. gontran@gontran.net 2002-12-05 09:56:46 0000 Another reason bioperl-cvs is useful: On the bioperl-l list, after describing a problem with the bioperl code, it is not rare that users are told to upgrade to current CVS -- new "stable" releases are generally obsolete in 1-2 months and new releases are about every 6. Cheers, Gontran mcummings@gentoo.org 2002-12-17 11:44:19 0000 Gontran, this is not forgotten. Unfortunately, problem tickets have taken presidence over enhancement tickets for the last week. mcummings@gentoo.org 2002-12-21 20:11:33 0000 missing dep for MIME-Lite in SOAP-LITE ebuild, adding mcummings@gentoo.org 2002-12-22 10:05:14 0000 This is now masked in portage. I can't unmask it until the expat version you require is unmasked since bioperl's deps cannot be fulfilled otherwise. mcummings@gentoo.org 2002-12-22 10:49:09 0000 will keep an eye out for the deps to unmask, otherwise this is done 6140 2002-12-02 15:01 0000 current stable bioperl-live bioperl-1.0.2.ebuild application/octet-stream IyBDb3B5cmlnaHQgMjAwMiBHZW50b28gVGVjaG5vbG9naWVzLCBJbmMuCiMgRGlzdHJpYnV0ZWQg dW5kZXIgdGhlIHRlcm1zIG9mIHRoZSBHTlUgR2VuZXJhbCBQdWJsaWMgTGljZW5zZSwgdjIgb3Ig bGF0ZXIKIyAkSGVhZGVyICQKIyBBdXRob3I6IEdvbnRyYW4gWmVwZWRhIDxnb250cmFuQGdvbnRy YW4ubmV0PgoKSVVTRT0ibXlzcWwgZ2QiCgppbmhlcml0IHBlcmwtbW9kdWxlCgpDQVRFR09SWT0i ZGV2LXBlcmwiCkRFU0NSSVBUSU9OPSJUaGUgQmlvcGVybCBQcm9qZWN0IGlzIGEgY29sbGVjdGlv biBvZiB0b29scyBmb3IgYmlvaW5mb3JtYXRpY3MsIGdlbm9taWNzIGFuZCBsaWZlIHNjaWVuY2Ug cmVzZWFyY2guIgpTUkNfVVJJPSJmdHA6Ly9iaW9wZXJsLm9yZy9wdWIvRElTVC8ke1B9LnRhci5n eiIKSE9NRVBBR0U9Imh0dHA6Ly93d3cuYmlvcGVybC5vcmciCgpMSUNFTlNFPSJBcnRpc3RpYyB8 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